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[177820_at]

Description ZC373.2 /REP_DB=WormBase Gene ID /WP=CE02375 /TR=Q23258 /GB=CAA88974.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 45      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 27.2
(2.8)
A 		28
(3)
A 		5.4
(-3)
A 		18
(0.3)
A 		23
B 20.9
(3)
A 		14.6
(0.6)
A 		18.4
(2.1)
A 		5
(-3)
A 		16
C 11.3
(-2.4)
A 		16
(3)
A 		10.8
(-3)
A 		11.8
(-1.8)
A 		5
avr 19.8
(3) 		19.5
(2.8) 		11.5
(-3) 		11.6
(-2.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3940
1 2 3 4 5 6 range
A 23.2
(-3)
A 		23.7
(-3)
A 		40.3
(-3)
A 		29.6
(-3)
A 		3413.9
(3)
P 		3126.7
(2.5)
P 		3391
B 28.4
(-3)
A 		25.7
(-3)
A 		49.1
(-3)
A 		40.5
(-3)
A 		3684.4
(3)
P 		2515.9
(1.1)
P 		3659
C 8.2
(-3)
A 		44.7
(-2.9)
A 		59
(-2.9)
A 		79.1
(-2.9)
A 		3948.1
(3)
P 		2793.3
(1.2)
P 		3940
avr 19.9
(-3) 		31.4
(-3) 		49.5
(-3) 		49.7
(-3) 		3682.1
(3) 		2812
(1.6) 		3662
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9.9
(3)
A 		6.1
(0.3)
A 		1.4
(-3)
A 		2.6
(-2.2)
A 		9
B 6.7
(3)
A 		3.6
(-0.3)
A 		4.3
(0.4)
A 		1.1
(-3)
A 		6
C 3.7
(0.9)
A 		4.6
(3)
A 		3.8
(1.2)
A 		2
(-3)
A 		3
avr 6.8
(3) 		4.8
(0.6) 		3.2
(-1.4) 		1.9
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1494
1 2 3 4 5 6 range
A 4.3
(-3)
A 		8.4
(-3)
A 		8.8
(-3)
A 		7.5
(-3)
A 		1030.2
(3)
P 		761.2
(1.4)
P 		1026
B 9.9
(-3)
A 		8.6
(-3)
A 		11.9
(-3)
A 		10.7
(-3)
A 		1496.9
(3)
P 		938.2
(0.7)
P 		1488
C 3
(-3)
A 		13.6
(-3)
A 		15
(-2.9)
A 		15.9
(-2.9)
A 		1277.6
(3)
P 		935.1
(1.4)
P 		1275
avr 5.7
(-3) 		10.2
(-3) 		11.9
(-3) 		11.4
(-3) 		1268.2
(3) 		878.2
(1.1) 		1263
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177820_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16870
Sequence Type Exemplar sequence
Representative Public ID ZC373.2 NCBI
Target Description ZC373.2 /REP_DB=WormBase Gene ID /WP=CE02375 /TR=Q23258 /GB=CAA88974.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077286(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077286 NCBI Caenorhabditis elegans ZC373.2 (ZC373.2) mRNA, complete cds. 11/11 None
SNAP00000017662 ENSEMBL cdna:SNAP chromosome:CEL140:X:10057897:10058348:-1 11/11 None
GENEFINDER00000017674 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10057897:10058348:-1 11/11 None
ZC373.2 ENSEMBL cdna:known chromosome:CEL140:X:10057741:10058359:-1 gene:ZC373.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10057740-10058348(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC373.2
Entrez Gene 181216 Entrez gene
SwissProt Q23258 EMBL-EBI
WormBase CE02375 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88974 Hypothetical protein ZC373.2 [Caenorhabditis elegans] ref|NP_509687.1| ZC373.2 [Caenorhabditis elegans] 4.0E-53
blast CAA88974 Hypothetical protein ZC373.2 [Caenorhabditis elegans] ref|NP_509687.1| ZC373.2 [Caenorhabditis elegans] 2.0E-43
blast CAE58771 Hypothetical protein CBG01966 [Caenorhabditis briggsae] 2.0E-29
Sequence
Target Sequence 
>C. ELEGANS:177820_AT
gcctattcccagagacttgcatgtggattctcctgctcccgtcgtaccgtcgtatctgct
ccaattgacggagccccaggaaccgcaacatgttccgacacaaccacgccagaaagatgt
tccggatgttgccaggctagagctcttcaagacggcctcaccacggacttcgcatctgga
ttcatctcaaatgaccgtagaacctgtgtctgctgcttcaacaacaccaacagaaactgt
ggaggcggaaacacgttcttcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCTATTCCCAGAGACTTGCATGTG 312 281 52 Antisense
GACTTGCATGTGGATTCTCCTGCTC 399 371 65 Antisense
ACCGTCGTATCTGCTCCAATTGACG 559 87 97 Antisense
CTGCTCCAATTGACGGAGCCCCAGG 620 237 107 Antisense
GCCCCAGGAACCGCAACATGTTCCG 637 283 124 Antisense
TCCGACACAACCACGCCAGAAAGAT 374 595 145 Antisense
AAGATGTTCCGGATGTTGCCAGGCT 262 155 165 Antisense
GTTGCCAGGCTAGAGCTCTTCAAGA 589 439 179 Antisense
ACTTCGCATCTGGATTCATCTCAAA 80 105 218 Antisense
TGACCGTAGAACCTGTGTCTGCTGC 12 571 243 Antisense
TGGAGGCGGAAACACGTTCTTCGAT 632 547 291 Antisense
Sequence Source Affymetrix Proprietary Database