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[177819_at]

Description T06G6.8 /REP_DB=WormBase Gene ID /WP=CE13347 /TR=O62370 /GB=CAB04704.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 9.8
(-3)
A 		93.8
(3)
A 		70.4
(1.3)
A 		36.5
(-1.1)
A 		84
B 14
(-2.7)
A 		77.3
(3)
A 		36
(-0.7)
A 		11
(-3)
A 		66
C 85.6
(3)
A 		64
(1.3)
A 		20.3
(-2.2)
A 		10.2
(-3)
A 		75
avr 36.5
(-1.2) 		78.4
(3) 		42.2
(-0.7) 		19.2
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 45.6
(-2.4)
A 		64.7
(-0.9)
A 		60.2
(-1.2)
A 		114.8
(3)
A 		62.3
(-1.1)
A 		37.6
(-3)
A 		77
B 74.5
(3)
A 		50
(0.1)
A 		64.7
(1.8)
A 		50
(0.1)
A 		25.2
(-2.9)
A 		24.4
(-3)
A 		50
C 87.7
(3)
A 		30.6
(-3)
A 		52.9
(-0.7)
A 		32
(-2.9)
A 		81.3
(2.3)
A 		50.4
(-0.9)
A 		57
avr 69.3
(3) 		48.4
(-0.9) 		59.3
(1.1) 		65.6
(2.3) 		56.3
(0.5) 		37.5
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 3.6
(-3)
A 		20.4
(3)
A 		18.4
(2.3)
A 		5.3
(-2.4)
A 		17
B 4.5
(-2.2)
A 		19.1
(3)
A 		8.3
(-0.9)
A 		2.4
(-3)
A 		17
C 28.3
(3)
A 		18.4
(0.8)
A 		7.1
(-1.8)
A 		1.7
(-3)
A 		27
avr 12.1
(0.3) 		19.3
(3) 		11.3
(0) 		3.1
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 8.4
(-3)
A 		23
(1.2)
A 		13.1
(-1.6)
A 		29.1
(3)
A 		18.8
(0)
A 		9.2
(-2.8)
A 		21
B 25.9
(3)
A 		16.6
(-0.3)
A 		15.7
(-0.6)
A 		13.2
(-1.5)
A 		10.2
(-2.6)
A 		9.1
(-3)
A 		17
C 32.5
(3)
A 		9.3
(-2.3)
A 		13.5
(-1.4)
A 		6.4
(-3)
A 		26.3
(1.6)
A 		16.9
(-0.6)
A 		26
avr 22.3
(3) 		16.3
(-0.4) 		14.1
(-1.6) 		16.2
(-0.5) 		18.4
(0.8) 		11.7
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177819_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2398
Sequence Type Exemplar sequence
Representative Public ID T06G6.8 NCBI
Target Description T06G6.8 /REP_DB=WormBase Gene ID /WP=CE13347 /TR=O62370 /GB=CAB04704.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060826(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060826 NCBI Caenorhabditis elegans T06G6.8 (T06G6.8) mRNA, complete cds. 11/11 None
SNAP00000021715 ENSEMBL cdna:SNAP chromosome:CEL140:I:12732982:12737797:1 11/11 None
GENEFINDER00000021721 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12732982:12737797:1 11/11 None
T06G6.8 ENSEMBL cdna:known chromosome:CEL140:I:12732982:12734327:1 gene:T06G6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12732912-12734258(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06G6.8
Entrez Gene 188200 Entrez gene
SwissProt O62370 EMBL-EBI
WormBase CE13347 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04704 Hypothetical protein T06G6.8 [Caenorhabditis elegans] ref|NP_493227.1| T06G6.8 [Caenorhabditis elegans] 1.0E-178
blast CAB04704 Hypothetical protein T06G6.8 [Caenorhabditis elegans] ref|NP_493227.1| T06G6.8 [Caenorhabditis elegans] 1.0E-177
blast CAB04704 Hypothetical protein T06G6.8 [Caenorhabditis elegans] ref|NP_493227.1| T06G6.8 [Caenorhabditis elegans] 1.0E-169
blast CAB04707 Hypothetical protein T06G6.9 [Caenorhabditis elegans] ref|NP_493228.1| VHL (von Hippel-Landau) Binding Protein family member (vbp-1) [Caenorhabditis elegans] sp|O18054|PFD3_CAEEL Probable prefoldin subunit 4.0E-86
blast CAB04707 Hypothetical protein T06G6.9 [Caenorhabditis elegans] ref|NP_493228.1| VHL (von Hippel-Landau) Binding Protein family member (vbp-1) [Caenorhabditis elegans] sp|O18054|PFD3_CAEEL Probable prefoldin subunit 6.0E-86
blast CAE67990 Hypothetical protein CBG13600 [Caenorhabditis briggsae] 3.0E-76
blast CAE67990 Hypothetical protein CBG13600 [Caenorhabditis briggsae] 4.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR004127 EMBL-EBI Putative prefoldin chaperone 1.6E-39
Pfam IPR005514 EMBL-EBI Protein of unknown function DUF316 3.5E-71
Pfam IPR004127 EMBL-EBI Putative prefoldin chaperone 1.6E-39
Sequence
Target Sequence 
>C. ELEGANS:177819_AT
caactagatcctctaaacttcccacctcatcggtttggaaggcaacaactacaccttctg
atcttccaaccaagccttcaagaacccgatcattgacctcaacgagtactactactgcaa
agcttccaacaacaacatccaccaccttcgcagctccacaagcttccacggaaccatcgg
aggcaacagaagctttagcaacggctacacctgctgatcttccaaccaaaccttcgggga
gagaaattactacgatcacaggcactcgaaaattgagctcaacgagtactacaaagcttc
caaaaacagcatccaaaacatccacagctcgactagcttccacggaacactcggaagccg
caggagctccagcaacggctacaccttttgatcttccaaccaagccttcaacaagtacta
caaagcttccatcaacggcttccaccacctccgcagctccactagctttcacggaaccct
cggaggttgcagaagctccagctaatccagcggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACTAGATCCTCTAAACTTCCCAC 166 189 656 Antisense
ACTTCCCACCTCATCGGTTTGGAAG 184 101 672 Antisense
AGGCAACAACTACACCTTCTGATCT 115 55 695 Antisense
CCAAGCCTTCAAGAACCCGATCATT 703 273 725 Antisense
GTACTACTACTGCAAAGCTTCCAAC 590 459 761 Antisense
AAGCTTCCACGGAACCATCGGAGGC 693 149 815 Antisense
TTAGCAACGGCTACACCTGCTGATC 1 683 850 Antisense
CAAAACATCCACAGCTCGACTAGCT 315 191 969 Antisense
TCGACTAGCTTCCACGGAACACTCG 649 601 984 Antisense
GAACACTCGGAAGCCGCAGGAGCTC 207 349 1000 Antisense
AGAAGCTCCAGCTAATCCAGCGGAT 87 75 1146 Antisense
Sequence Source Affymetrix Proprietary Database