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[177818_at]

Description C43D7.5 /REP_DB=WormBase Gene ID /WP=CE18549 /TR=Q9XVB9 /GB=CAB03961.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 09      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 1.9
(-3)
A
3.9
(-2.6)
A
3.4
(-2.7)
A
30.5
(3)
A
29
B 1.9
(-3)
A
2.6
(-2.3)
A
2.5
(-2.4)
A
8.1
(3)
A
6
C 1.8
(-3)
A
2.4
(-2.3)
A
7
(3)
A
2.8
(-1.8)
A
5
avr 1.9
(-3)
3
(-2.4)
4.3
(-1.8)
13.8
(3)
12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2
(-2.8)
A
4.2
(1.9)
A
1.9
(-3)
A
2.2
(-2.4)
A
2.1
(-2.6)
A
4.7
(3)
A
3
B 1.6
(-2.8)
A
2.3
(-1.9)
A
6.3
(3)
A
2
(-2.3)
A
1.4
(-3)
A
1.5
(-2.9)
A
5
C 4.6
(3)
A
2.4
(-1.4)
A
3.2
(0.2)
A
2.5
(-1.2)
A
1.6
(-3)
A
1.7
(-2.8)
A
3
avr 2.7
(-0.1)
3
(0.7)
3.8
(3)
2.2
(-1.6)
1.7
(-3)
2.6
(-0.4)
2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.7
(-3)
A
0.9
(-2.7)
A
0.9
(-2.7)
A
4.5
(3)
A
4
B 0.6
(-3)
A
0.6
(-3)
A
0.6
(-3)
A
1.7
(3)
A
1
C 0.6
(-2.7)
A
0.7
(-2.4)
A
2.4
(3)
A
0.5
(-3)
A
2
avr 0.6
(-3)
0.7
(-2.6)
1.3
(-0.4)
2.2
(3)
2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.4
(-3)
A
1.5
(3)
A
0.4
(-3)
A
0.6
(-1.9)
A
0.6
(-1.9)
A
1.1
(0.8)
A
1
B 0.6
(-2.4)
A
0.8
(-1.2)
A
1.5
(3)
A
0.5
(-3)
A
0.6
(-2.4)
A
0.5
(-3)
A
1
C 1.7
(3)
A
0.7
(-2)
A
0.8
(-1.5)
A
0.5
(-3)
A
0.5
(-3)
A
0.6
(-2.5)
A
1
avr 0.9
(1.8)
1
(3)
0.9
(1.8)
0.5
(-3)
0.6
(-1.8)
0.7
(-0.6)
1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177818_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14331
Sequence Type Exemplar sequence
Representative Public ID C43D7.5 NCBI
Target Description C43D7.5 /REP_DB=WormBase Gene ID /WP=CE18549 /TR=Q9XVB9 /GB=CAB03961.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075363(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_075363 NCBI Caenorhabditis elegans C43D7.5 (C43D7.5) mRNA, complete cds. 11/11 None
SNAP00000010481 ENSEMBL cdna:SNAP chromosome:CEL140:V:19323197:19323776:1 11/11 None
GENEFINDER00000010490 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19323197:19323776:1 11/11 None
C43D7.5 ENSEMBL cdna:known chromosome:CEL140:V:19323197:19323776:1 gene:C43D7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19323196-19323776(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-6
Ensembl C43D7.5
Entrez Gene 183410 Entrez gene
SwissProt Q9XVB9 EMBL-EBI
WormBase CE18549 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03961 Hypothetical protein C43D7.5 [Caenorhabditis elegans] ref|NP_507764.1| C43D7.5 [Caenorhabditis elegans] 1.0E-71
blast CAB03959 Hypothetical protein C43D7.4 [Caenorhabditis elegans] ref|NP_507765.1| C43D7.4 [Caenorhabditis elegans] 1.0E-43
Sequence
Target Sequence
>C. ELEGANS:177818_AT
cctattcacacaccgtggaccgaaaagacaatttcgacaatacgactaccaacacgaaaa
ccgtgaaccgaaatgataattgtaacaaccaagaggaaggtgatgtgaatatgtatcgcc
gcaatgataattgtaacaaccgagaggcaacaaactctagaagtgctaattattctattc
ataatcaaggaatgataaactgctacaatggaatcgccattgacaatcgggcgttcaatt
cgtcgggcgcgaataccatggccggaacagaatttttgcgggctttccttgacgcaccaa
tgtcagtcatgccaggcagtcggaagaacgcaatc


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
CCTATTCACACACCGTGGACCGAAA 531 267 83 Antisense
TTCGACAATACGACTACCAACACGA 14 697 115 Antisense
GATGTGAATATGTATCGCCGCAATG 271 409 184 Antisense
ATGGAATCGCCATTGACAATCGGGC 652 51 290 Antisense
TGACAATCGGGCGTTCAATTCGTCG 478 571 303 Antisense
ATTCGTCGGGCGCGAATACCATGGC 537 1 320 Antisense
ATACCATGGCCGGAACAGAATTTTT 312 23 335 Antisense
CAGAATTTTTGCGGGCTTTCCTTGA 77 205 350 Antisense
CTTTCCTTGACGCACCAATGTCAGT 197 223 365 Antisense
CCAATGTCAGTCATGCCAGGCAGTC 402 277 379 Antisense
GCCAGGCAGTCGGAAGAACGCAATC 560 279 393 Antisense
Sequence Source Affymetrix Proprietary Database