[Home] | [Total List]

[177815_s_at]

Description E01G4.3 /REP_DB=WormBase Gene ID /WP=CE09110 /TR=O02237 /GB=CAB05715.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 99      4grp_highest_8_8 > 15      4grp_high_8_8 > 22      6grp_highest_nonorm > 49      6grp_total > 94      4grp_total > 17      6grp_highest_sub > In      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9744
1 2 3 4 range
A 575.6
(-3)
P 		2752.6
(-1.7)
P 		1997.2
(-2.1)
P 		10319.6
(3)
P 		9744
B 690.7
(-3)
P 		2554.1
(-1.7)
P 		1983.3
(-2.1)
P 		9597.5
(3)
P 		8907
C 626.4
(-3)
P 		2540.3
(-1.7)
P 		1837.4
(-2.2)
P 		9457.5
(3)
P 		8831
avr 630.9
(-3) 		2615.7
(-1.7) 		1939.3
(-2.1) 		9791.5
(3) 		9161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4298
1 2 3 4 5 6 range
A 3248.8
(-2.7)
P 		4886.7
(0.2)
P 		3072
(-3)
P 		5530.8
(1.3)
P 		6484.9
(3)
P 		5613.5
(1.5)
P 		3413
B 2839.3
(-3)
P 		4685.7
(-0)
P 		3142.1
(-2.5)
P 		4833.1
(0.2)
P 		6533.6
(3)
P 		5342
(1.1)
P 		3694
C 2874.7
(-3)
P 		4412.8
(-0.8)
P 		3729.2
(-1.8)
P 		4287.5
(-1)
P 		7137.7
(3)
P 		4901.6
(-0.1)
P 		4263
avr 2987.6
(-3) 		4661.7
(-0.3) 		3314.4
(-2.5) 		4883.8
(0) 		6718.7
(3) 		5285.7
(0.7) 		3731
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1838
1 2 3 4 range
A 209.6
(-3)
P 		597.5
(-1.2)
P 		522.1
(-1.6)
P 		1510.6
(3)
P 		1301
B 220.3
(-3)
P 		630.8
(-1.7)
P 		459.6
(-2.2)
P 		2045.2
(3)
P 		1825
C 207.3
(-3)
P 		730.4
(-0.7)
P 		640.4
(-1.1)
P 		1594.7
(3)
P 		1387
avr 212.4
(-3) 		652.9
(-1.2) 		540.7
(-1.7) 		1716.8
(3) 		1504

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2056
1 2 3 4 5 6 range
A 598.9
(-3)
P 		1738
(2)
P 		669
(-2.7)
P 		1402.7
(0.6)
P 		1956.9
(3)
P 		1366.7
(0.4)
P 		1358
B 987.9
(-2.3)
P 		1559.7
(-0.5)
P 		763
(-3)
P 		1280.1
(-1.4)
P 		2654.5
(3)
P 		1992
(0.9)
P 		1892
C 1065.5
(-2.2)
P 		1346.5
(-1)
P 		949.2
(-2.6)
P 		862.2
(-3)
P 		2309.7
(3)
P 		1640.9
(0.2)
P 		1448
avr 884.1
(-2.6) 		1548.1
(-0) 		793.7
(-3) 		1181.7
(-1.5) 		2307
(3) 		1666.5
(0.5) 		1513
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177815_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3875
Sequence Type Exemplar sequence
Representative Public ID E01G4.3 NCBI
Target Description E01G4.3 /REP_DB=WormBase Gene ID /WP=CE09110 /TR=O02237 /GB=CAB05715.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064433(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064433 NCBI Caenorhabditis elegans E01G4.3 (E01G4.3) mRNA, complete cds. 11/11 None
SNAP00000016568 ENSEMBL cdna:SNAP chromosome:CEL140:II:13461173:13461908:-1 11/11 None
GENEFINDER00000016577 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13461173:13462865:-1 11/11 None
E01G4.3 ENSEMBL cdna:known chromosome:CEL140:II:13460964:13461966:-1 gene:E01G4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13461169-13461905(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E01G4.3
Entrez Gene 174988 Entrez gene
SwissProt O02237 EMBL-EBI
WormBase CE09110 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05715 Hypothetical protein E01G4.3 [Caenorhabditis elegans] ref|NP_496834.1| E01G4.3 [Caenorhabditis elegans] 3.0E-61
blast CAB05715 Hypothetical protein E01G4.3 [Caenorhabditis elegans] ref|NP_496834.1| E01G4.3 [Caenorhabditis elegans] 1.0E-60
blast CAE73345 Hypothetical protein CBG20777 [Caenorhabditis briggsae] 4.0E-48
blast CAE73345 Hypothetical protein CBG20777 [Caenorhabditis briggsae] 2.0E-47
Sequence
Target Sequence 
>C. ELEGANS:177815_S_AT
atcgactgcttttattcagctccaatcaagacttgctgctcagaagatgccttcgacaca
agcgaaacaagtgctcgctcatgctctcatcgaaaccctccaaaattggtgcatgcagct
cttctggatgacagttctgtgcgttatcaactgctgtgccgaagaggacgagaaaaaacc
gaagagaaagcaccaagagcatccagaattcaagaagagaattgaggatattgagcagaa
gatgctccgccacctcacctcgccaatgatttcgggaccacttcgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGACTGCTTTTATTCAGCTCCAA 56 37 36 Antisense
GCTCCAATCAAGACTTGCTGCTCAG 14 299 54 Antisense
GCTGCTCAGAAGATGCCTTCGACAC 85 297 70 Antisense
GCGAAACAAGTGCTCGCTCATGCTC 552 289 97 Antisense
TCTCATCGAAACCCTCCAAAATTGG 390 611 120 Antisense
AATTGGTGCATGCAGCTCTTCTGGA 439 179 139 Antisense
GCTCTTCTGGATGACAGTTCTGTGC 63 301 153 Antisense
GTTCTGTGCGTTATCAACTGCTGTG 55 443 169 Antisense
TCAACTGCTGTGCCGAAGAGGACGA 467 629 182 Antisense
TCACCTCGCCAATGATTTCGGGACC 475 625 290 Antisense
CAATGATTTCGGGACCACTTCGCCC 250 183 299 Antisense
Sequence Source Affymetrix Proprietary Database