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[177814_s_at]

Description T11B7.5 /REP_DB=WormBase Gene ID /WP=CE03651 /TR=Q22390 /GB=CAA90990.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 63      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 43      6grp_total > 51      4grp_total > 03      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1701
1 2 3 4 range
A 1355.2
(-1.5)
P 		1021.9
(-3)
P 		1090.2
(-2.7)
P 		2388.5
(3)
P 		1367
B 1242.7
(-2.3)
P 		1070.9
(-3)
P 		1101
(-2.9)
P 		2509.6
(3)
P 		1439
C 1208.1
(-1.8)
P 		1018
(-2.5)
P 		863.6
(-3)
P 		2564.7
(3)
P 		1701
avr 1268.7
(-2) 		1036.9
(-2.9) 		1018.3
(-3) 		2487.6
(3) 		1469

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1555
1 2 3 4 5 6 range
A 337.6
(-3)
P 		810.3
(-1.2)
P 		1892.6
(3)
P 		1336
(0.9)
P 		587.1
(-2)
P 		647
(-1.8)
P 		1555
B 876.7
(-2.3)
P 		1288
(0.1)
P 		1774.3
(3)
P 		1279
(0.1)
P 		750.6
(-3)
P 		916.3
(-2)
P 		1024
C 692.2
(-2.3)
P 		1122.8
(0.4)
P 		1056.3
(0)
P 		1521
(3)
P 		589.7
(-3)
P 		801.1
(-1.6)
P 		931
avr 635.5
(-3) 		1073.7
(-0.2) 		1574.4
(3) 		1378.7
(1.7) 		642.5
(-3) 		788.1
(-2) 		939
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 313
1 2 3 4 range
A 493.4
(3)
P 		221.8
(-3)
P 		285
(-1.6)
P 		349.6
(-0.2)
P 		272
B 396.3
(0)
P 		264.5
(-2.8)
P 		255.1
(-3)
P 		534.8
(3)
P 		280
C 399.9
(1.6)
P 		292.7
(-3)
P 		301
(-2.6)
P 		432.5
(3)
P 		140
avr 429.9
(2.7) 		259.7
(-3) 		280.4
(-2.3) 		439
(3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 369
1 2 3 4 5 6 range
A 62.2
(-3)
P 		288.2
(0.9)
P 		412.2
(3)
P 		338.8
(1.7)
P 		177.2
(-1)
P 		157.5
(-1.4)
P 		350
B 305.1
(-3)
P 		428.7
(2.9)
P 		430.9
(3)
P 		338.8
(-1.4)
P 		305
(-3)
P 		341.7
(-1.3)
P 		126
C 256.6
(-0.4)
P 		342.6
(3)
P 		268.8
(0.1)
P 		305.9
(1.5)
P 		190.8
(-3)
P 		268.2
(0.1)
P 		152
avr 208
(-3) 		353.2
(2.4) 		370.6
(3) 		327.8
(1.4) 		224.3
(-2.4) 		255.8
(-1.2) 		163
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177814_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8754
Sequence Type Exemplar sequence
Representative Public ID T11B7.5 NCBI
Target Description T11B7.5 /REP_DB=WormBase Gene ID /WP=CE03651 /TR=Q22390 /GB=CAA90990.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069134(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069134 NCBI Caenorhabditis elegans T11B7.5 (T11B7.5) mRNA, complete cds. 11/11 None
SNAP00000029870 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8855338:8856045:-1 11/11 None
GENEFINDER00000029873 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8855338:8856045:-1 11/11 None
T11B7.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:8855291:8856045:-1 gene:T11B7.5 11/11 None
T11B7.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:8855291:8856047:-1 gene:T11B7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8855343-8855916(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T11B7.5
Entrez Gene 177700 Entrez gene
SwissProt Q22390 EMBL-EBI
WormBase CE03651 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90990 Hypothetical protein T11B7.5 [Caenorhabditis elegans] ref|NP_501535.1| T11B7.5 [Caenorhabditis elegans] 1.0E-71
blast CAA90990 Hypothetical protein T11B7.5 [Caenorhabditis elegans] ref|NP_501535.1| T11B7.5 [Caenorhabditis elegans] 3.0E-71
blast CAE67063 Hypothetical protein CBG12471 [Caenorhabditis briggsae] 8.0E-55
blast CAE67063 Hypothetical protein CBG12471 [Caenorhabditis briggsae] 3.0E-40
Sequence
Target Sequence 
>C. ELEGANS:177814_S_AT
gctttcttggacactctcggagaaggaattcgtcaaaaattctgggacattgtggctgcg
gcaaagaccgatgcacaaacaaatctgccttcggacaaggcaaaagaattggctggagaa
gtaatcagcgattttgaacaaggaaacttattcaagagtcatcaagaaatttctgcggag
cttaaatccaaattcgagtcacttgatgatgctgacaaggcagcggttaaaaacttggca
aaagtttatggaaagcaagccaaggcacttgtcatgccacatcttccagaggactgcaag
gctaaaactgatgctacagatgatgcaggaaaagctgctgtcgccggaggtttcgacacg
ggagactaccttccgcgcaagaaacgcgagcttttgttcatcgataacctcactgcagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTTCTTGGACACTCTCGGAGAAG 623 303 28 Antisense
GTGGCTGCGGCAAAGACCGATGCAC 487 489 79 Antisense
CACAAACAAATCTGCCTTCGGACAA 647 193 101 Antisense
AATTCGAGTCACTTGATGATGCTGA 609 177 218 Antisense
GCCAAGGCACTTGTCATGCCACATC 681 277 286 Antisense
ATGCCACATCTTCCAGAGGACTGCA 380 41 301 Antisense
TGCTGTCGCCGGAGGTTTCGACACG 654 579 363 Antisense
TTCGACACGGGAGACTACCTTCCGC 239 681 379 Antisense
AGACTACCTTCCGCGCAAGAAACGC 148 1 390 Antisense
GAAACGCGAGCTTTTGTTCATCGAT 132 359 408 Antisense
TGTTCATCGATAACCTCACTGCAGC 171 563 422 Antisense
Sequence Source Affymetrix Proprietary Database