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[177813_at]

Description F43G6.6 /REP_DB=WormBase Gene ID /WP=CE20788 /TR=Q20367 /GB=CAA90395.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 56      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 3.5
(-3)
A 		9.5
(-1.9)
A 		35.3
(3)
A 		4.2
(-2.9)
A 		32
B 4.1
(-2.5)
A 		7.1
(3)
A 		6.5
(1.9)
A 		3.8
(-3)
A 		3
C 6.1
(-3)
A 		6.9
(-2.8)
A 		31.2
(3)
A 		7.3
(-2.7)
A 		25
avr 4.6
(-3) 		7.8
(-2) 		24.3
(3) 		5.1
(-2.8) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 4.8
(-2.4)
A 		1.8
(-3)
A 		34.4
(3)
A 		5.5
(-2.3)
A 		7.9
(-1.9)
A 		32
(2.6)
A 		33
B 3.7
(-3)
A 		3.8
(-3)
A 		41
(3)
A 		5
(-2.8)
A 		25.5
(0.5)
P 		38
(2.5)
A 		37
C 2.5
(-3)
A 		6.1
(-1.2)
A 		6.6
(-1)
A 		7.7
(-0.4)
A 		9.6
(0.5)
A 		14.6
(3)
A 		12
avr 3.7
(-3) 		3.9
(-3) 		27.3
(2.8) 		6.1
(-2.4) 		14.3
(-0.4) 		28.2
(3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.3
(-2.5)
A 		2.1
(-2)
A 		9.2
(3)
A 		0.6
(-3)
A 		9
B 1.3
(0.3)
A 		1.7
(3)
A 		1.5
(1.7)
A 		0.8
(-3)
A 		1
C 2
(-2.5)
A 		2
(-2.5)
A 		10.9
(3)
A 		1.2
(-3)
A 		10
avr 1.5
(-2.4) 		1.9
(-2) 		7.2
(3) 		0.9
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.9
(-2.8)
A 		0.6
(-3)
A 		7.5
(2.8)
A 		1.4
(-2.3)
A 		2.4
(-1.5)
A 		7.8
(3)
A 		7
B 1.3
(-3)
A 		1.3
(-3)
A 		10
(1)
A 		1.3
(-3)
A 		10.4
(1.2)
P 		14.2
(3)
A 		13
C 0.9
(-3)
A 		1.9
(-1.5)
A 		1.7
(-1.8)
A 		1.6
(-2)
A 		3.1
(0.3)
A 		4.9
(3)
A 		4
avr 1
(-3) 		1.3
(-2.8) 		6.4
(1.1) 		1.4
(-2.7) 		5.3
(0.2) 		9
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177813_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3815
Sequence Type Exemplar sequence
Representative Public ID F43G6.6 NCBI
Target Description F43G6.6 /REP_DB=WormBase Gene ID /WP=CE20788 /TR=Q20367 /GB=CAA90395.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064119(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064119 NCBI Caenorhabditis elegans F43G6.6 (F43G6.6) mRNA, complete cds. 11/11 None
SNAP00000023956 ENSEMBL cdna:SNAP chromosome:CEL140:II:11806474:11808745:1 11/11 None
GENEFINDER00000023963 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11806474:11808745:1 11/11 None
F43G6.6 ENSEMBL cdna:known chromosome:CEL140:II:11806472:11808710:1 gene:F43G6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11806470-11808665(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43G6.6
Entrez Gene 174812 Entrez gene
SwissProt Q20367 EMBL-EBI
WormBase CE20788 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90395 Hypothetical protein F43G6.6 [Caenorhabditis elegans] ref|NP_496520.1| F43G6.6 [Caenorhabditis elegans] 0.0
blast NP_500611 F29B9.2b [Caenorhabditis elegans] gb|AAK29800.1| Hypothetical protein F29B9.2b [Caenorhabditis elegans] 0.0
blast NP_500610 F29B9.2a [Caenorhabditis elegans] gb|AAK29799.1| Hypothetical protein F29B9.2a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 6.7E-13
Sequence
Target Sequence 
>C. ELEGANS:177813_AT
aaggaaggacagactcttttgattccagctggctggatacatgcagtgctcaccactatc
gactctctcgcttttggaggcaatttcttgcatcttggaaatctgataatgcacatgcgt
gtagttgatatggagaattcgattcgcgaggaaatcaagaatgaagaaggattttcatat
ccaaatttcgaatatcttcattggatgtatatgaaaattgttcttctcgacaaaattcga
gaagcaaacgaccaaggaattgacatgcgtgagctgaactcaaacatctggacagcgtca
caactgatgaaagacaagttggagatttggttggatagagagttgagattcaatgtagtc
gaggacactattatcaagttcaatgagaagaagaagctggtgaatttggtgcagaatgtc
atgaaagctcagacaaagatccaggagactagggaccagttgatgggtgaaaaacagaaa
cgcaagtgccgcggtgatgaaaacgattgcccatccagctccgccaaatacaccaagaag
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGAAGGACAGACTCTTTTGATTC 185 161 1033 Antisense
CCAGCTGGCTGGATACATGCAGTGC 11 271 1057 Antisense
TACATGCAGTGCTCACCACTATCGA 636 643 1070 Antisense
GACTCTCTCGCTTTTGGAGGCAATT 609 373 1093 Antisense
GGAGGCAATTTCTTGCATCTTGGAA 137 515 1108 Antisense
GAATTGACATGCGTGAGCTGAACTC 346 323 1289 Antisense
TGAACTCAAACATCTGGACAGCGTC 665 571 1307 Antisense
GATCCAGGAGACTAGGGACCAGTTG 337 413 1470 Antisense
GAAACGCAAGTGCCGCGGTGATGAA 101 357 1509 Antisense
GATGAAAACGATTGCCCATCCAGCT 549 411 1528 Antisense
AGCTCCGCCAAATACACCAAGAAGT 371 81 1549 Antisense
Sequence Source Affymetrix Proprietary Database