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[177812_at]

Description F10C2.7 /REP_DB=WormBase Gene ID /WP=CE09311 /TR=P90832 /GB=CAB04079.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 81      6grp_highest_nonorm > 55      6grp_total > 82      4grp_total > 50      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 12.7
(-2.8)
A 		151
(3)
A 		92.5
(0.5)
A 		9
(-3)
A 		142
B 44.4
(-1.2)
A 		127.9
(3)
A 		77.9
(0.5)
A 		8
(-3)
A 		120
C 17.9
(-3)
A 		110.6
(3)
A 		62.5
(-0.1)
A 		31.2
(-2.1)
A 		93
avr 25
(-2.5) 		129.8
(3) 		77.6
(0.2) 		16.1
(-3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2596
1 2 3 4 5 6 range
A 500.2
(-3)
P 		980.6
(-1.8)
P 		1314.6
(-0.9)
P 		2269.7
(1.6)
P 		2832.2
(3)
P 		646.4
(-2.6)
P 		2332
B 563.8
(-3)
P 		1094.3
(-1.7)
P 		1191.6
(-1.4)
P 		2495.2
(1.8)
P 		2990.8
(3)
P 		1051.6
(-1.8)
P 		2427
C 394.9
(-3)
P 		1060.8
(-1.1)
P 		1192.4
(-0.7)
P 		2499.7
(2.9)
P 		2519.5
(3)
P 		905
(-1.6)
P 		2125
avr 486.3
(-3) 		1045.2
(-1.5) 		1232.9
(-1) 		2421.5
(2.1) 		2780.8
(3) 		867.7
(-2) 		2295
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 4.6
(-2.4)
A 		32.8
(3)
A 		24.2
(1.4)
A 		1.3
(-3)
A 		32
B 14.2
(-0.5)
A 		31.6
(3)
A 		18.1
(0.3)
A 		1.7
(-3)
A 		30
C 5.9
(-2.9)
A 		31.8
(3)
A 		21.8
(0.7)
A 		5.3
(-3)
A 		27
avr 8.2
(-1.9) 		32.1
(3) 		21.4
(0.8) 		2.8
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1123
1 2 3 4 5 6 range
A 92.2
(-3)
P 		348.7
(-1)
P 		286.3
(-1.5)
P 		575.6
(0.8)
P 		854.6
(3)
P 		157.4
(-2.5)
P 		762
B 196.2
(-3)
P 		364.2
(-2)
P 		289.3
(-2.5)
P 		660.9
(-0.3)
P 		1215.1
(3)
P 		392.1
(-1.8)
P 		1019
C 146.4
(-3)
P 		323.7
(-1.4)
P 		303.5
(-1.6)
P 		502.7
(0.2)
P 		815.3
(3)
P 		303
(-1.6)
P 		669
avr 144.9
(-3) 		345.5
(-1.5) 		293
(-1.9) 		579.7
(0.2) 		961.7
(3) 		284.2
(-2) 		817
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177812_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13724
Sequence Type Exemplar sequence
Representative Public ID F10C2.7 NCBI
Target Description F10C2.7 /REP_DB=WormBase Gene ID /WP=CE09311 /TR=P90832 /GB=CAB04079.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073619(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073619 NCBI Caenorhabditis elegans F10C2.7 (F10C2.7) mRNA, complete cds. 11/11 None
SNAP00000025562 ENSEMBL cdna:SNAP chromosome:CEL140:V:12056537:12058908:1 11/11 None
GENEFINDER00000025570 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12056537:12058908:1 11/11 None
F10C2.7 ENSEMBL cdna:known chromosome:CEL140:V:12056540:12058908:1 gene:F10C2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12056539-12058908(+) 98.54 100.0
Public Domain and Genome References
Gene Title
Ensembl F10C2.7
Entrez Gene 184290 Entrez gene
SwissProt P90832 EMBL-EBI
WormBase CE35459 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04079 Hypothetical protein F10C2.7 [Caenorhabditis elegans] ref|NP_506020.2| F10C2.7 [Caenorhabditis elegans] 0.0
blast CAE75377 Hypothetical protein CBG23364 [Caenorhabditis briggsae] 0.0
blast CAE72730 Hypothetical protein CBG19968 [Caenorhabditis briggsae] 1.0E-118
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506020.2 12 13-35,66-85,92-114,124-146,153-175,185-204,247-269,284-306,318-340,344-366,379-401,411-430
F10C2.7 12 13-35,66-85,92-114,124-146,153-175,185-204,247-269,284-306,318-340,344-366,379-401,411-430
SNAP00000025562 12 12-34,67-86,93-115,125-147,154-176,186-205,248-270,285-307,319-341,345-367,380-402,412-431
GENEFINDER00000025570 12 12-34,67-86,93-115,125-147,154-176,186-205,248-270,285-307,319-341,345-367,380-402,412-431
Sequence
Target Sequence 
>C. ELEGANS:177812_AT
tgattcttctattgacctattctcctatatatttccgtaaagtccttgactttagtgttg
tcgaaactggaatgttgatatccttgtcggcagtagctcatatgccagctaaactcttat
ctggatggttatcagatcgtcaattcctttctgaacgtgttcgaatgtggttcttcaata
cttcatcagtcggacttgctggattcatgtgtgtcagtttggcatatattcctgtctcat
ggaagtatacaagtgttattatgttcagtattgtctacactttgatgggaacaaattgtg
gtggattttataaatgtggaacatttgcgtcacgtcaatatgctcactttgtgcttgcga
tgattcaatttatgaaatgtattgccttatttgctgctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATTCTTCTATTGACCTATTCTCC 137 565 860 Antisense
GACCTATTCTCCTATATATTTCCGT 225 383 873 Antisense
GATATCCTTGTCGGCAGTAGCTCAT 286 425 936 Antisense
GCTCATATGCCAGCTAAACTCTTAT 462 299 955 Antisense
GATCGTCAATTCCTTTCTGAACGTG 343 413 994 Antisense
GTGGTTCTTCAATACTTCATCAGTC 627 489 1026 Antisense
GTCGGACTTGCTGGATTCATGTGTG 554 471 1048 Antisense
AGTTTGGCATATATTCCTGTCTCAT 240 63 1075 Antisense
TTTGCGTCACGTCAATATGCTCACT 187 669 1183 Antisense
TATGCTCACTTTGTGCTTGCGATGA 273 655 1198 Antisense
ATGTATTGCCTTATTTGCTGCTCCA 693 47 1236 Antisense
Sequence Source Affymetrix Proprietary Database