[Home] | [Total List]

[177810_s_at]

Description F28D1.2 /REP_DB=WormBase Gene ID /WP=CE05742 /TR=Q19872 /GB=CAA94596.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 1.4
(-2.9)
A 		3.4
(-2.4)
A 		1.2
(-3)
A 		21.6
(3)
A 		20
B 0.8
(-3)
A 		1.4
(-2.8)
A 		1.3
(-2.9)
A 		22
(3)
A 		21
C 1.1
(-3)
A 		3.4
(-2.5)
A 		1.6
(-2.9)
A 		29.8
(3)
A 		29
avr 1.1
(-3) 		2.7
(-2.6) 		1.4
(-2.9) 		24.5
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 3.2
(-2.9)
A 		1.4
(-3)
A 		2.2
(-3)
A 		1
(-3)
A 		1.6
(-3)
A 		152.6
(3)
P 		152
B 40.5
(-1.6)
A 		13.4
(-2.5)
A 		1
(-3)
A 		1.5
(-3)
A 		1.4
(-3)
A 		165.3
(3)
P 		164
C 2.7
(-2.9)
A 		1.2
(-3)
A 		1.2
(-3)
A 		1.8
(-3)
A 		17.2
(-2.3)
A 		141.7
(3)
P 		141
avr 15.5
(-2.4) 		5.3
(-2.8) 		1.5
(-3) 		1.4
(-3) 		6.7
(-2.8) 		153.2
(3) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.5
(-2.6)
A 		0.7
(-2.2)
A 		0.3
(-3)
A 		3.2
(3)
A 		3
B 0.3
(-3)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		4.7
(3)
A 		4
C 0.4
(-3)
A 		1
(-2.2)
A 		0.6
(-2.7)
A 		5
(3)
A 		5
avr 0.4
(-3) 		0.7
(-2.5) 		0.4
(-3) 		4.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 0.6
(-2.9)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0.2
(-3)
A 		0.5
(-3)
A 		37.2
(3)
P 		37
B 14.1
(-1.6)
A 		4.4
(-2.6)
A 		0.2
(-3)
A 		0.4
(-3)
A 		0.6
(-3)
A 		61.6
(3)
P 		61
C 1
(-2.9)
A 		0.4
(-3)
A 		0.3
(-3)
A 		0.4
(-3)
A 		5.6
(-2.3)
A 		47.4
(3)
P 		47
avr 5.2
(-2.4) 		1.8
(-2.8) 		0.3
(-3) 		0.3
(-3) 		2.2
(-2.8) 		48.7
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177810_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9479
Sequence Type Exemplar sequence
Representative Public ID F28D1.2 NCBI
Target Description F28D1.2 /REP_DB=WormBase Gene ID /WP=CE05742 /TR=Q19872 /GB=CAA94596.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069958(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069958 NCBI Caenorhabditis elegans F28D1.2 (F28D1.2) mRNA, complete cds. 11/11 None
SNAP00000029691 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12374814:12376022:-1 11/11 None
GENEFINDER00000029710 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12374814:12376022:-1 11/11 None
F28D1.2 ENSEMBL cdna:known chromosome:CEL140:IV:12374707:12376090:-1 gene:F28D1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12374819-12376028(-) 86.99 100.0
Public Domain and Genome References
Gene Title
Ensembl F28D1.2
Entrez Gene 178186 Entrez gene
SwissProt Q19872 EMBL-EBI
WormBase CE05742 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94596 Hypothetical protein F28D1.2 [Caenorhabditis elegans] ref|NP_502359.1| F28D1.2 [Caenorhabditis elegans] 1.0E-122
blast CAE59847 Hypothetical protein CBG03320 [Caenorhabditis briggsae] 2.0E-21
Sequence
Target Sequence 
>C. ELEGANS:177810_S_AT
gaattacttgtggctaaccttggtgagagcacagatcctgagaatgaaaaacgaatcaaa
aatttgatgccagcagcgaaaactggtattccaccagagggtgttttgagattgacgatt
aatgcattggacagtgctgctagagaatccaagaaaaagacgatggccatcgagagcctc
acgaaacaggtcgacgatgcgaacaagctcactgaagtctatatgaaacggcttgaagag
ctggaggacaagcatcgattcgaagaggcgctcacgttgaagatccaggcgatgatgatc
gagacgacggggcagttggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTACTTGTGGCTAACCTTGGTG 312 325 334 Antisense
AACCTTGGTGAGAGCACAGATCCTG 306 147 349 Antisense
AGCAGCGAAAACTGGTATTCCACCA 382 75 405 Antisense
GAGGGTGTTTTGAGATTGACGATTA 194 401 430 Antisense
GACAGTGCTGCTAGAGAATCCAAGA 281 369 463 Antisense
AGACGATGGCCATCGAGAGCCTCAC 496 71 491 Antisense
GAGAGCCTCACGAAACAGGTCGACG 425 393 505 Antisense
TCGACGATGCGAACAAGCTCACTGA 500 601 524 Antisense
GCATCGATTCGAAGAGGCGCTCACG 68 311 585 Antisense
GGCGCTCACGTTGAAGATCCAGGCG 238 543 600 Antisense
GATCGAGACGACGGGGCAGTTGGAA 520 415 630 Antisense
Sequence Source Affymetrix Proprietary Database