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[177806_s_at]

Description C43D7.6 /REP_DB=WormBase Gene ID /WP=CE18550 /TR=Q9XVB7 /GB=CAB03964.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 13      6grp_cgc > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 29.6
(3)
A 		8.6
(-3)
A 		19.7
(0.2)
A 		23.7
(1.3)
A 		21
B 11.8
(-1.1)
A 		4.9
(-3)
A 		15.2
(-0.1)
A 		26.3
(3)
A 		21
C 17.3
(-1)
A 		36.3
(3)
A 		7.5
(-3)
A 		24.5
(0.5)
A 		29
avr 19.6
(0.1) 		16.6
(-1.6) 		14.1
(-3) 		24.8
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 35.2
(3)
A 		35.3
(3)
A 		17
(-0.4)
A 		21.3
(0.4)
A 		16.5
(-0.4)
A 		2.6
(-3)
A 		33
B 10.6
(-0.9)
A 		2.8
(-2.9)
A 		26.2
(3)
A 		15.9
(0.4)
A 		2.5
(-3)
A 		16.2
(0.5)
A 		24
C 2.6
(-3)
A 		25.5
(2)
A 		3.9
(-2.7)
A 		5.8
(-2.3)
A 		9.5
(-1.5)
A 		30
(3)
A 		27
avr 16.1
(0.4) 		21.2
(3) 		15.7
(0.2) 		14.3
(-0.5) 		9.5
(-3) 		16.3
(0.5) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.8
(3)
A 		1.9
(-3)
A 		5.1
(-0.8)
A 		3.5
(-1.9)
A 		9
B 3.8
(0.5)
A 		1.2
(-3)
A 		3.5
(0.1)
A 		5.6
(3)
A 		4
C 5.7
(-0.6)
A 		10.4
(3)
A 		2.6
(-3)
A 		4.1
(-1.8)
A 		8
avr 6.8
(3) 		4.5
(-1.5) 		3.7
(-3) 		4.4
(-1.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.5
(-0)
A 		12.5
(3)
A 		3.7
(-1.4)
A 		5.4
(-0.6)
A 		5
(-0.8)
A 		0.6
(-3)
A 		12
B 3.7
(0.1)
A 		0.9
(-3)
A 		6.4
(3)
A 		4.2
(0.6)
A 		1
(-2.9)
A 		6.1
(2.7)
A 		6
C 1
(-3)
A 		7.8
(1.5)
A 		1
(-3)
A 		1.2
(-2.9)
A 		3.1
(-1.6)
A 		10
(3)
A 		9
avr 3.7
(-2) 		7.1
(3) 		3.7
(-2) 		3.6
(-2.1) 		3
(-3) 		5.6
(0.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177806_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13888
Sequence Type Exemplar sequence
Representative Public ID C43D7.6 NCBI
Target Description C43D7.6 /REP_DB=WormBase Gene ID /WP=CE18550 /TR=Q9XVB7 /GB=CAB03964.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075361(11), NM_075199(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075361 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-208) (srh-208) mRNA, complete cds. 11/11 A 
NM_075199 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-209) (srh-209) mRNA, complete cds. 11/11 A 
SNAP00000010480 ENSEMBL cdna:SNAP chromosome:CEL140:V:19320106:19321073:1 11/11 None
GENEFINDER00000010485 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19315122:19323013:1 11/11 None
ZK262.11 ENSEMBL cdna:known chromosome:CEL140:V:18406296:18407434:-1 gene:ZK262.11 11/11 None
C43D7.6 ENSEMBL cdna:known chromosome:CEL140:V:19319935:19321073:1 gene:C43D7.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013656 7/11 Cross Hyb Matching Probes None
GENEFINDER00000013669 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19315847-19321073(+) 100.0 100.0
chrV:18406295-19306301(-) 90.07 90.07
Public Domain and Genome References
Gene Title

Gene Symbol srh-208
srh-209
Ensembl ZK262.11
C43D7.6
Entrez Gene 183411 Entrez gene
191273 Entrez gene
SwissProt Q9XVB7 EMBL-EBI
Q9XTR2 EMBL-EBI
WormBase CE35959 Wormbase
CE36074 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03964 Hypothetical protein C43D7.6 [Caenorhabditis elegans] ref|NP_507762.2| Serpentine Receptor, class H family member (srh-208) [Caenorhabditis elegans] 0.0
blast CAB16552 Hypothetical protein ZK262.11 [Caenorhabditis elegans] ref|NP_507600.2| Serpentine Receptor, class H family member (srh-209) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.5E-121
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507762.2 7 20-42,55-77,97-119,140-162,201-223,244-266,279-301
NP_507600.2 7 20-42,55-77,97-119,140-162,201-223,244-266,279-301
ZK262.11 7 20-42,55-77,97-119,140-162,201-223,244-266,279-301
C43D7.6 7 20-42,55-77,97-119,140-162,201-223,244-266,279-301
SNAP00000010480 6 7-25,40-62,83-105,144-166,187-209,222-244
GENEFINDER00000010485 8 362-384,397-419,439-461,482-504,543-565,586-608,621-643,672-689
Sequence
Target Sequence 
>C. ELEGANS:177806_S_AT
tcctgggtgccactttggaaaaaattcattacaccagggtttttgccgggtcagtatatt
gtgtacccatcgtttctgctacttgggataccttttattccggatcagaaaactgcattg
caggatatctttaagacccttccctgtctgccacgtgaaatctacgaggcagacatctat
gtgatagctgatgacatgacttatcatattatggcgatttcaatgggattgtcaggagca
attagtcaaattatatttttcaacggctgtcttatatatagtagtttggagcagttaaag
gcaaaaacaatgtcacaaaagacgttccaaatgcagaagcaattcctaacagcggtggtc
gtgcaggctgcatctccaatgatatgcttgataattccacttatatattttacaatagca
cacttggtggggtattataatcagggaattatcaattgcttacttattaatgtatctatt
cacggtctaatctctacaacagccctggtgactcttcataagccttatcggacagctgtg
cggagcatgatctcgaaattgccagagccaaggcgaccgaaagtctcacagttatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTGGGTGCCACTTTGGAAAAAAT 58 593 1246 Antisense
GTATATTGTGTACCCATCGTTTCTG 516 453 1299 Antisense
TCGTTTCTGCTACTTGGGATACCTT 477 603 1315 Antisense
GCTACTTGGGATACCTTTTATTCCG 494 297 1323 Antisense
ATTTTTCAACGGCTGTCTTATATAT 554 13 1500 Antisense
GTCACAAAAGACGTTCCAAATGCAG 372 465 1557 Antisense
GTCGTGCAGGCTGCATCTCCAATGA 386 473 1603 Antisense
ACAATAGCACACTTGGTGGGGTATT 15 115 1657 Antisense
TTAATGTATCTATTCACGGTCTAAT 70 661 1712 Antisense
GCGGAGCATGATCTCGAAATTGCCA 490 293 1785 Antisense
GGCGACCGAAAGTCTCACAGTTATC 29 541 1817 Antisense
Sequence Source Affymetrix Proprietary Database