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[177805_at]

Description C43D7.6 /REP_DB=WormBase Gene ID /WP=CE18550 /TR=Q9XVB7 /GB=CAB03964.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 36      6grp_cgc > 47      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 14.7
(3)
A 		5.6
(-1.9)
A 		3.5
(-3)
A 		7.3
(-1)
A 		11
B 2.9
(-3)
A 		19.7
(3)
A 		6.7
(-1.6)
A 		6.5
(-1.7)
A 		17
C 3.2
(0.8)
A 		4.7
(3)
A 		0.6
(-3)
A 		4
(2)
A 		4
avr 6.9
(0.1) 		10
(3) 		3.6
(-3) 		5.9
(-0.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 5.1
(1.6)
A 		1.1
(-3)
A 		6.3
(3)
A 		2.9
(-0.9)
A 		3.4
(-0.3)
A 		4.2
(0.6)
A 		5
B 1.1
(-2.7)
A 		2.8
(-0.2)
A 		5
(3)
A 		0.9
(-3)
A 		2.3
(-1)
A 		1.6
(-2)
A 		4
C 2.1
(-3)
A 		10
(-1.2)
A 		5.9
(-2.1)
A 		6.5
(-2)
A 		3
(-2.8)
A 		28.3
(3)
A 		26
avr 2.8
(-3) 		4.6
(-1.7) 		5.7
(-1) 		3.4
(-2.6) 		2.9
(-2.9) 		11.4
(3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 5.4
(3)
A 		1.2
(-2.6)
A 		0.9
(-3)
A 		1.1
(-2.7)
A 		5
B 0.9
(-3)
A 		4.9
(3)
A 		1.6
(-2)
A 		1.4
(-2.3)
A 		4
C 1.1
(1.5)
A 		1.4
(3)
A 		0.2
(-3)
A 		0.7
(-0.5)
A 		1
avr 2.5
(3) 		2.5
(3) 		0.9
(-3) 		1.1
(-2.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.9
(0)
A 		0.4
(-3)
A 		1.4
(3)
A 		0.7
(-1.2)
A 		1
(0.6)
A 		1
(0.6)
A 		1
B 0.4
(-1.8)
A 		0.9
(1.2)
A 		1.2
(3)
A 		0.2
(-3)
A 		0.9
(1.2)
A 		0.6
(-0.6)
A 		1
C 0.8
(-3)
A 		3
(-1.5)
A 		1.5
(-2.5)
A 		1.3
(-2.7)
A 		1
(-2.9)
A 		9.5
(3)
A 		9
avr 0.7
(-3) 		1.4
(-1.6) 		1.4
(-1.6) 		0.7
(-3) 		1
(-2.4) 		3.7
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177805_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13888
Sequence Type Exemplar sequence
Representative Public ID C43D7.6 NCBI
Target Description C43D7.6 /REP_DB=WormBase Gene ID /WP=CE18550 /TR=Q9XVB7 /GB=CAB03964.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075361(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075361 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-208) (srh-208) mRNA, complete cds. 11/11 A 
SNAP00000010480 ENSEMBL cdna:SNAP chromosome:CEL140:V:19320106:19321073:1 11/11 None
GENEFINDER00000010485 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19315122:19323013:1 11/11 None
C43D7.6 ENSEMBL cdna:known chromosome:CEL140:V:19319935:19321073:1 gene:C43D7.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19315847-19321073(+) 100.0 100.0
chrV:18406295-19306301(-) 90.07 90.07
Public Domain and Genome References
Gene Title
Gene Symbol srh-208
Ensembl C43D7.6
Entrez Gene 183411 Entrez gene
SwissProt Q9XVB7 EMBL-EBI
WormBase CE35959 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03964 Hypothetical protein C43D7.6 [Caenorhabditis elegans] ref|NP_507762.2| Serpentine Receptor, class H family member (srh-208) [Caenorhabditis elegans] 0.0
blast CAB16552 Hypothetical protein ZK262.11 [Caenorhabditis elegans] ref|NP_507600.2| Serpentine Receptor, class H family member (srh-209) [Caenorhabditis elegans] 0.0
blast CAB03964 Hypothetical protein C43D7.6 [Caenorhabditis elegans] ref|NP_507762.2| Serpentine Receptor, class H family member (srh-208) [Caenorhabditis elegans] 1.0E-149
blast CAB16552 Hypothetical protein ZK262.11 [Caenorhabditis elegans] ref|NP_507600.2| Serpentine Receptor, class H family member (srh-209) [Caenorhabditis elegans] 1.0E-148
blast CAE53731 Hypothetical protein C43D7.9 [Caenorhabditis elegans] ref|NP_001023705.1| C43D7.9 [Caenorhabditis elegans] 1.0E-142
blast CAB16545 Hypothetical protein ZK262.1 [Caenorhabditis elegans] ref|NP_507601.2| Serpentine Receptor, class H family member (srh-207) [Caenorhabditis elegans] 1.0E-133
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 6.5E-121
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507762.2 7 20-42,55-77,97-119,140-162,201-223,244-266,279-301
C43D7.6 7 20-42,55-77,97-119,140-162,201-223,244-266,279-301
SNAP00000010480 6 7-25,40-62,83-105,144-166,187-209,222-244
GENEFINDER00000010485 8 362-384,397-419,439-461,482-504,543-565,586-608,621-643,672-689
Sequence
Target Sequence 
>C. ELEGANS:177805_AT
gcattgcaggatatctttaagacccttccctgtctgccacgtgaaatctacgaggcagac
atctatgtgatagctgatgacatgacttatcatattatggcgatttcaatgggattgtca
ggagcaattagtcaaattatatttttcaacggctgtcttatatatagtagtttggagcag
ttaaaggcaaaaacaatgtcacaaaagacgttccaaatgcagaagcaattcctaacagcg
gtggtcgtgcaggctgcatctccaatgatatgcttgataattccacttatatattttaca
atagcacacttggtggggtattataatcagggaattatcaattgcttacttattaatgta
tctattcacggtctaatctctacaacagccctggtgactcttcataagccttatcggaca
gctgtgcggagcatgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTGCAGGATATCTTTAAGACCC 323 307 1360 Antisense
AGGATATCTTTAAGACCCTTCCCTG 373 57 1367 Antisense
GTCTGCCACGTGAAATCTACGAGGC 416 471 1391 Antisense
GCCACGTGAAATCTACGAGGCAGAC 537 279 1395 Antisense
AATCTACGAGGCAGACATCTATGTG 618 169 1404 Antisense
CGAGGCAGACATCTATGTGATAGCT 76 249 1410 Antisense
ATCATATTATGGCGATTTCAATGGG 35 31 1448 Antisense
AATCTCTACAACAGCCCTGGTGACT 493 169 1734 Antisense
TCATAAGCCTTATCGGACAGCTGTG 407 619 1761 Antisense
AGCCTTATCGGACAGCTGTGCGGAG 125 85 1766 Antisense
TCGGACAGCTGTGCGGAGCATGATC 411 607 1773 Antisense
Sequence Source Affymetrix Proprietary Database