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[177804_at]

Description T01B7.8 /REP_DB=WormBase Gene ID /WP=CE03592 /TR=Q22048 /GB=CAA91301.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 69      6grp_total > 79      4grp_total > 49      6grp_high1_sub > Cu      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 383
1 2 3 4 range
A 93.1
(-2.8)
P 		436.3
(3)
P 		436.3
(3)
P 		81.4
(-3)
A 		355
B 89.7
(-2.7)
A 		455.9
(3)
P 		346.4
(1.3)
P 		72.8
(-3)
A 		383
C 103.9
(-3)
P 		427.1
(3)
P 		395.9
(2.4)
P 		104.7
(-3)
A 		323
avr 95.6
(-2.8) 		439.8
(3) 		392.9
(2.2) 		86.3
(-3) 		354

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 97.8
(-3)
A 		195.5
(0.1)
P 		106.7
(-2.7)
P 		137.1
(-1.7)
P 		284.6
(3)
P 		234.6
(1.4)
P 		187
B 108.9
(-3)
M 		214.2
(3)
P 		120.8
(-2.3)
P 		167.6
(0.3)
P 		121.8
(-2.3)
P 		191.7
(1.7)
P 		105
C 129.2
(-3)
P 		208.3
(3)
P 		204.5
(2.7)
P 		143.5
(-1.9)
P 		160.7
(-0.6)
P 		200
(2.4)
P 		79
avr 112
(-3) 		206
(2.8) 		144
(-1) 		149.4
(-0.7) 		189
(1.8) 		208.8
(3) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 33.9
(-1.7)
P 		94.7
(1.9)
P 		114
(3)
P 		11.9
(-3)
A 		102
B 28.6
(-2.2)
A 		112.6
(3)
P 		80.3
(1)
P 		15.5
(-3)
A 		97
C 34.4
(-2.2)
P 		122.8
(2.2)
P 		138
(3)
P 		17.6
(-3)
A 		120
avr 32.3
(-1.9) 		110
(2.9) 		110.8
(3) 		15
(-3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 18
(-3)
A 		69.5
(1.6)
P 		23.2
(-2.5)
P 		34.8
(-1.5)
P 		85.9
(3)
P 		57.1
(0.5)
P 		68
B 37.9
(-1.8)
M 		71.3
(3)
P 		29.3
(-3)
P 		44.4
(-0.9)
P 		49.5
(-0.1)
P 		71.5
(3)
P 		42
C 47.9
(-0)
P 		63.6
(2.5)
P 		52.1
(0.7)
P 		28.9
(-3)
P 		52
(0.6)
P 		66.9
(3)
P 		38
avr 34.6
(-3) 		68.1
(3) 		34.9
(-2.9) 		36
(-2.7) 		62.5
(2) 		65.2
(2.5) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177804_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3825
Sequence Type Exemplar sequence
Representative Public ID T01B7.8 NCBI
Target Description T01B7.8 /REP_DB=WormBase Gene ID /WP=CE03592 /TR=Q22048 /GB=CAA91301.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063458(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063458 NCBI Caenorhabditis elegans T01B7.8 (T01B7.8) mRNA, complete cds. 11/11 None
SNAP00000025610 ENSEMBL cdna:SNAP chromosome:CEL140:II:8736747:8737446:-1 11/11 None
GENEFINDER00000025629 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8736757:8737446:-1 11/11 None
T01B7.8 ENSEMBL cdna:known chromosome:CEL140:II:8736757:8737446:-1 gene:T01B7.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8736753-8737443(-) 77.78 100.0
Public Domain and Genome References
Gene Title
Ensembl T01B7.8
Entrez Gene 187933 Entrez gene
SwissProt Q22048 EMBL-EBI
WormBase CE03592 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6952 defense response inferred from electronic annotation QuickGO AmiGO
9613 response to pest, pathogen or parasite inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
5506 iron ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91301 Hypothetical protein T01B7.8 [Caenorhabditis elegans] ref|NP_495859.1| T01B7.8 [Caenorhabditis elegans] 2.0E-23
blast CAE59720 Hypothetical protein CBG03153 [Caenorhabditis briggsae] 2.0E-15
Sequence
Target Sequence 
>C. ELEGANS:177804_AT
attctccttgccatcggaacttttattgcggtttctcaagttcaatctgcggttcttcca
gtatcatcgactgagttggcaactgttggaactgatgtttcaacagcttcaactgccatc
gacactctaggaaattctagctcaagagtgaaaagacaaggaggatgtgggtgctgcggt
tgtggatgtggatgttgtggatgcggaggaggaggtggtggatgtggatgctgctgttgt
agaccaagatgctgctgctgctgtcgccgttgctgtacctgctgtagaacttgctgctgc
accagatgctgcacttgctgtcgtccatgctgttgtggatgtggatgtggatgtggatgc
tgtggatgcggaggaggaggacgtaagcgtcgttccctccaaaacctcagaatcgatgat
gctaaccgtgctctcggaatcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTCCTTGCCATCGGAACTTTTA 416 9 34 Antisense
GGAACTTTTATTGCGGTTTCTCAAG 174 529 49 Antisense
TCAAGTTCAATCTGCGGTTCTTCCA 177 633 69 Antisense
GTTCTTCCAGTATCATCGACTGAGT 596 443 85 Antisense
GATGTTTCAACAGCTTCAACTGCCA 47 411 127 Antisense
TCAACTGCCATCGACACTCTAGGAA 245 631 142 Antisense
CCGTTGCTGTACCTGCTGTAGAACT 26 265 300 Antisense
TAGAACTTGCTGCTGCACCAGATGC 22 653 318 Antisense
TTCCCTCCAAAACCTCAGAATCGAT 524 693 426 Antisense
AATCGATGATGCTAACCGTGCTCTC 113 169 444 Antisense
TGCTAACCGTGCTCTCGGAATCAAG 96 581 453 Antisense
Sequence Source Affymetrix Proprietary Database