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[177803_at]

Description F36D3.8 /REP_DB=WormBase Gene ID /WP=CE15972 /TR=O45464 /GB=CAB04320.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 29.3
(3)
A 		2.8
(-3)
A 		7.2
(-2)
A 		17.6
(0.4)
A 		27
B 11.5
(-3)
A 		29.8
(-1.3)
A 		75.3
(3)
A 		35.2
(-0.8)
A 		64
C 21.6
(-0.9)
A 		3.2
(-3)
A 		17.2
(-1.4)
A 		55.7
(3)
A 		53
avr 20.8
(-0.8) 		11.9
(-3) 		33.2
(2.3) 		36.2
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 14.1
(-3)
A 		25.3
(-2.5)
A 		42.6
(-1.8)
A 		56.9
(-1.1)
P 		84.5
(0)
P 		152.8
(3)
P 		139
B 43.2
(-2.4)
A 		42.5
(-2.5)
A 		54.1
(-1.9)
A 		32.3
(-3)
A 		113.5
(1.2)
P 		148.9
(3)
P 		117
C 7.6
(-2.9)
A 		49.5
(-1.1)
A 		42.7
(-1.4)
A 		6.3
(-3)
A 		94.2
(0.9)
P 		142
(3)
P 		136
avr 21.6
(-3) 		39.1
(-2.2) 		46.5
(-1.8) 		31.8
(-2.5) 		97.4
(0.6) 		147.9
(3) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.7
(3)
A 		0.6
(-3)
A 		1.9
(-2.2)
A 		2.6
(-1.8)
A 		10
B 3.7
(-3)
A 		7.4
(-1.4)
A 		17.5
(3)
A 		7.5
(-1.3)
A 		14
C 7.2
(1.4)
A 		0.9
(-3)
A 		6
(0.6)
A 		9.4
(3)
A 		9
avr 7.2
(1.6) 		3
(-3) 		8.5
(3) 		6.5
(0.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 2.6
(-3)
A 		9
(-1.9)
A 		9.3
(-1.8)
A 		14.4
(-1)
P 		25.5
(1)
P 		37.2
(3)
P 		35
B 15
(-2.2)
A 		14.1
(-2.3)
A 		13.1
(-2.4)
A 		8.6
(-3)
A 		46.1
(1.8)
P 		55.5
(3)
P 		47
C 2.8
(-2.8)
A 		15.1
(-1.2)
A 		10.9
(-1.8)
A 		1.3
(-3)
A 		30.5
(0.8)
P 		47.5
(3)
P 		46
avr 6.8
(-3) 		12.7
(-2.1) 		11.1
(-2.4) 		8.1
(-2.8) 		34
(1.1) 		46.7
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177803_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13857
Sequence Type Exemplar sequence
Representative Public ID F36D3.8 NCBI
Target Description F36D3.8 /REP_DB=WormBase Gene ID /WP=CE15972 /TR=O45464 /GB=CAB04320.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074783(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074783 NCBI Caenorhabditis elegans F36D3.8 (F36D3.8) mRNA, complete cds. 11/11 None
SNAP00000025152 ENSEMBL cdna:SNAP chromosome:CEL140:V:16531836:16532795:1 11/11 None
GENEFINDER00000025166 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16529786:16532795:1 11/11 None
F36D3.8 ENSEMBL cdna:known chromosome:CEL140:V:16529786:16532795:1 gene:F36D3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16529785-16532795(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36D3.8
Entrez Gene 180108 Entrez gene
SwissProt O45464 EMBL-EBI
WormBase CE15972 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04320 Hypothetical protein F36D3.8 [Caenorhabditis elegans] ref|NP_507184.1| F36D3.8 [Caenorhabditis elegans] 0.0
blast CAB05803 Hypothetical protein T09F5.10 [Caenorhabditis elegans] ref|NP_506745.1| T09F5.10 [Caenorhabditis elegans] 1.0E-163
blast CAB04320 Hypothetical protein F36D3.8 [Caenorhabditis elegans] ref|NP_507184.1| F36D3.8 [Caenorhabditis elegans] 1.0E-162
blast CAB05803 Hypothetical protein T09F5.10 [Caenorhabditis elegans] ref|NP_506745.1| T09F5.10 [Caenorhabditis elegans] 1.0E-135
blast AAF39915 Hypothetical protein K08A2.2 [Caenorhabditis elegans] ref|NP_494418.1| K08A2.2 [Caenorhabditis elegans] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR009658 EMBL-EBI Protein of unknown function DUF1248 2.2E-124
Pfam IPR009658 EMBL-EBI Protein of unknown function DUF1248 5.1E-112
Pfam IPR009658 EMBL-EBI Protein of unknown function DUF1248 3.0E-77
Pfam IPR009658 EMBL-EBI Protein of unknown function DUF1248 5.1E-112
Sequence
Target Sequence 
>C. ELEGANS:177803_AT
catattcaacggcctcaaagagcacgaggacaaaggtcacaaggctgccgctgtttcata
caagagcttctacgacctcaaagacatgatcattcctgaaaatctggatttcagtggtat
tactgtaaaggatgcaagaaaggtgccaaaaagagatataatcaactacgatcaaacaat
tcatccatatcatcgagaaatgtttataatttctcacatgtatgacaaggatggttttgg
aaaagttgcgtatgatgaggatggaaatgtaattggaattggtcaagcgattgtctataa
aaccaaaaaagactgccacattagtccaatttatgcagatagcccacgtgttgctcaggc
aatgtttgcgtcaatgctaaaggatataaggacttctggcactgaaatcgctcattttga
gatgcggtcggcacaacagagtcaagattgtttccgatggatcgctccgttcctgaagtg
caagccaagtcgtgtccacatcgacaatctttcgtata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATATTCAACGGCCTCAAAGAGCAC 360 207 1590 Antisense
GGACAAAGGTCACAAGGCTGCCGCT 229 527 1617 Antisense
GGCTGCCGCTGTTTCATACAAGAGC 63 541 1632 Antisense
AGAGCTTCTACGACCTCAAAGACAT 54 71 1652 Antisense
ACTGCCACATTAGTCCAATTTATGC 435 99 1901 Antisense
ATTTATGCAGATAGCCCACGTGTTG 192 15 1918 Antisense
GGACTTCTGGCACTGAAATCGCTCA 532 525 1979 Antisense
GCTCATTTTGAGATGCGGTCGGCAC 123 301 1999 Antisense
GCGGTCGGCACAACAGAGTCAAGAT 290 293 2013 Antisense
CAAGCCAAGTCGTGTCCACATCGAC 655 185 2070 Antisense
GTCCACATCGACAATCTTTCGTATA 72 477 2083 Antisense
Sequence Source Affymetrix Proprietary Database