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[177802_at]

Description F56C4.2 /REP_DB=WormBase Gene ID /WP=CE05960 /TR=Q20860 /GB=CAA94289.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 42.6
(-1.8)
A 		12.2
(-3)
A 		25.3
(-2.5)
A 		169.6
(3)
A 		157
B 85.2
(3)
A 		71.6
(1.8)
A 		19.2
(-3)
A 		66.5
(1.3)
A 		66
C 74.3
(-1)
A 		14.9
(-3)
A 		52.2
(-1.7)
A 		189.6
(3)
P 		175
avr 67.4
(-1.1) 		32.9
(-3) 		32.2
(-3) 		141.9
(3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 69.5
(0.3)
A 		43.9
(-1.8)
A 		102.1
(3)
A 		52.5
(-1.1)
A 		82.4
(1.4)
A 		29.2
(-3)
A 		73
B 59.9
(1.9)
A 		70.7
(3)
A 		33.2
(-0.9)
A 		58.2
(1.7)
A 		49.5
(0.8)
A 		12.4
(-3)
A 		58
C 69.2
(-0.1)
A 		93.4
(1.9)
P 		98.4
(2.4)
A 		105.8
(3)
A 		66.1
(-0.4)
A 		35.4
(-3)
A 		70
avr 66.2
(1.7) 		69.3
(2) 		77.9
(3) 		72.2
(2.3) 		66
(1.6) 		25.7
(-3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 15.5
(0.5)
A 		2.7
(-3)
A 		6.6
(-1.9)
A 		24.8
(3)
A 		22
B 27.2
(3)
A 		17.7
(0.5)
A 		4.5
(-3)
A 		14.2
(-0.4)
A 		23
C 24.6
(1.4)
A 		4.3
(-3)
A 		18.2
(0)
A 		32
(3)
P 		28
avr 22.4
(2.5) 		8.2
(-3) 		9.8
(-2.4) 		23.7
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 12.8
(-1.1)
A 		15.6
(-0.1)
A 		22.2
(2.1)
A 		13.3
(-0.9)
A 		24.9
(3)
A 		7.1
(-3)
A 		18
B 20.9
(2.2)
A 		23.5
(3)
A 		8.1
(-1.9)
A 		15.4
(0.4)
A 		20.1
(1.9)
A 		4.6
(-3)
A 		19
C 25.7
(2)
A 		28.5
(3)
P 		25.1
(1.8)
A 		21.3
(0.4)
A 		21.4
(0.4)
A 		11.9
(-3)
A 		17
avr 19.8
(1.9) 		22.5
(3) 		18.5
(1.4) 		16.7
(0.6) 		22.1
(2.8) 		7.9
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177802_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9419
Sequence Type Exemplar sequence
Representative Public ID F56C4.2 NCBI
Target Description F56C4.2 /REP_DB=WormBase Gene ID /WP=CE05960 /TR=Q20860 /GB=CAA94289.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069565(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069565 NCBI Caenorhabditis elegans F56C4.2 (F56C4.2) mRNA, complete cds. 9/11 None
F56C4.2 ENSEMBL cdna:known chromosome:CEL140:IV:10641391:10642662:1 gene:F56C4.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000594 7/11 Cross Hyb Matching Probes None
GENEFINDER00000000597 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10641396-10642668(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56C4.2
Entrez Gene 186370 Entrez gene
SwissProt Q20860 EMBL-EBI
WormBase CE35558 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94289 Hypothetical protein F56C4.2 [Caenorhabditis elegans] ref|NP_501966.2| F56C4.2 [Caenorhabditis elegans] 2.0E-76
blast CAE60742 Hypothetical protein CBG04427 [Caenorhabditis briggsae] 2.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501966.2 1 113-135
F56C4.2 1 113-135
Sequence
Target Sequence 
>C. ELEGANS:177802_AT
ccagttcctaatttccatttttcagggtctcgttgaccaaaatatccatcaactacatgg
aaacctagtaaactgtcaaagtcctccaatggaatgctcaatcgatccacatgagtattt
gataaaatcaagaactaacgtcgagtgccgtgtcccatctgacgatcttttcttttacga
tgattgtccggaaaattggcggcatgctgttaaactaacagggaaaattaacggggaaat
taaaattaaattaagattatgtcagtcgagggttcattcatgtataattctgattcagaa
agcatgctcattccggttctactatcgtcgtagttattgtttctacaacagtcgttgtta
tagtctgacaatgtcgtgccacccagttgcaacaccaactccacttcttctgggcattat
attgactatcatcgttgttaccgttgcattgattttatgttttgtctactgcatttatct
ctggtgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGTTCCTAATTTCCATTTTTCAG 374 271 51 Antisense
GTAAACTGTCAAAGTCCTCCAATGG 452 461 118 Antisense
AGAACTAACGTCGAGTGCCGTGTCC 128 73 181 Antisense
TCCCATCTGACGATCTTTTCTTTTA 31 599 203 Antisense
GTCAGTCGAGGGTTCATTCATGTAT 197 467 311 Antisense
AGAAAGCATGCTCATTCCGGTTCTA 34 73 347 Antisense
ATTCCGGTTCTACTATCGTCGTAGT 473 5 360 Antisense
TAGTCTGACAATGTCGTGCCACCCA 76 655 411 Antisense
ACTCCACTTCTTCTGGGCATTATAT 280 99 448 Antisense
GACTATCATCGTTGTTACCGTTGCA 648 371 474 Antisense
GTCTACTGCATTTATCTCTGGTGTT 695 469 514 Antisense
Sequence Source Affymetrix Proprietary Database