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[177801_at] Lectin C-type domain

Description C29F3.5 /REP_DB=WormBase Gene ID /WP=CE08439 /TR=O45272 /GB=CAB02798.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 49      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 933
1 2 3 4 range
A 26.5
(-3)
A 		941.2
(3)
P 		759.5
(1.8)
P 		93.5
(-2.6)
A 		915
B 8.1
(-3)
A 		799.4
(2.9)
P 		811
(3)
P 		13.7
(-3)
A 		803
C 19.6
(-3)
A 		703.7
(3)
P 		698.7
(3)
P 		75
(-2.5)
A 		684
avr 18.1
(-3) 		814.8
(3) 		756.4
(2.6) 		60.7
(-2.7) 		797

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 81.2
(3)
A 		74.7
(2.5)
A 		41.8
(-0.3)
A 		21.2
(-2)
A 		9.9
(-3)
A 		54.3
(0.7)
A 		71
B 11.7
(-3)
A 		157.7
(3)
A 		96.3
(0.5)
A 		25.7
(-2.4)
A 		62.2
(-0.9)
A 		68.6
(-0.7)
A 		146
C 43
(-0.7)
A 		99.7
(3)
A 		96
(2.8)
A 		8.1
(-3)
A 		8.9
(-2.9)
A 		68.4
(0.9)
A 		92
avr 45.3
(-1.2) 		110.7
(3) 		78
(0.9) 		18.3
(-3) 		27
(-2.4) 		63.8
(-0) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 9.7
(-3)
A 		204.3
(3)
P 		198.5
(2.8)
P 		13.7
(-2.9)
A 		195
B 2.6
(-3)
A 		197.4
(3)
P 		187.9
(2.7)
P 		2.9
(-3)
A 		195
C 6.5
(-3)
A 		202.3
(2)
P 		243.5
(3)
P 		12.6
(-2.8)
A 		237
avr 6.3
(-3) 		201.3
(2.7) 		210
(3) 		9.7
(-2.9) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 15
(0.1)
A 		26.6
(3)
A 		9.1
(-1.4)
A 		5.4
(-2.4)
A 		3
(-3)
A 		13.2
(-0.4)
A 		24
B 4.1
(-3)
A 		52.5
(3)
A 		23.4
(-0.6)
A 		6.8
(-2.7)
A 		25.3
(-0.4)
A 		25.6
(-0.3)
A 		48
C 15.9
(-0)
A 		30.4
(3)
A 		24.4
(1.8)
A 		1.6
(-3)
A 		2.9
(-2.7)
A 		22.9
(1.4)
A 		29
avr 11.7
(-1.7) 		36.5
(3) 		19
(-0.3) 		4.6
(-3) 		10.4
(-1.9) 		20.6
(0) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177801_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14237
Sequence Type Exemplar sequence
Representative Public ID C29F3.5 NCBI
Target Description C29F3.5 /REP_DB=WormBase Gene ID /WP=CE08439 /TR=O45272 /GB=CAB02798.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074406(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074406 NCBI Caenorhabditis elegans C29F3.5 (C29F3.5) mRNA, complete cds. 11/11 None
SNAP00000013690 ENSEMBL cdna:SNAP chromosome:CEL140:V:15350478:15351696:-1 11/11 None
GENEFINDER00000013697 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15349310:15351696:-1 11/11 None
C29F3.5 ENSEMBL cdna:known chromosome:CEL140:V:15350478:15351696:-1 gene:C29F3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15350477-15351696(-) 99.26 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl C29F3.5
Entrez Gene 183006 Entrez gene
SwissProt O45272 EMBL-EBI
WormBase CE08439 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02798 Hypothetical protein C29F3.5 [Caenorhabditis elegans] ref|NP_506807.1| C29F3.5 [Caenorhabditis elegans] 1.0E-96
blast CAB02798 Hypothetical protein C29F3.5 [Caenorhabditis elegans] ref|NP_506807.1| C29F3.5 [Caenorhabditis elegans] 4.0E-96
blast CAA19425 Hypothetical protein H02K04.1 [Caenorhabditis elegans] ref|NP_506804.2| H02K04.1 [Caenorhabditis elegans] 2.0E-68
blast CAA19425 Hypothetical protein H02K04.1 [Caenorhabditis elegans] ref|NP_506804.2| H02K04.1 [Caenorhabditis elegans] 5.0E-68
blast CAB02800 Hypothetical protein C29F3.4 [Caenorhabditis elegans] ref|NP_506808.2| C29F3.4 [Caenorhabditis elegans] 2.0E-56
Sequence
Target Sequence 
>C. ELEGANS:177801_AT
ttcgcgtttttttgtatgttttctgttgaaggatgcattccaatgactccacctgaagaa
cctgttgtagttccagttcctgtttgccctgctggatggttttcattccaacgagccacc
ggattatggtgctacataatcgcaaaacctccagctgctgggtggactagtccccaacag
tattgtcaggataatcaaatgggctcttttgtcaatggatttgaaagtgccgcggaaaga
actcaattccttcaagacgcacttgccgctaatttggctccatcccagttccttcacatc
ggagccatccgatcgtgtgctgctcctccctgtgccacaactgatccttacgtctggcaa
aacggtgtctccaatgacaacaattttgccaatgactatatacaattgtatgatgggtct
ggtcagtgcttgtctatggatcttgcaaagaatggagagtacaatgatattacctgtgat
gctctgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGCGTTTTTTTGTATGTTTTCTG 592 697 34 Antisense
AAGGATGCATTCCAATGACTCCACC 163 161 62 Antisense
AACCTGTTGTAGTTCCAGTTCCTGT 261 143 92 Antisense
TTGCCCTGCTGGATGGTTTTCATTC 256 703 117 Antisense
ATTCCAACGAGCCACCGGATTATGG 4 7 138 Antisense
CTCCAGCTGCTGGGTGGACTAGTCC 88 237 182 Antisense
GGACTAGTCCCCAACAGTATTGTCA 306 525 197 Antisense
GACGCACTTGCCGCTAATTTGGCTC 109 381 289 Antisense
CACAACTGATCCTTACGTCTGGCAA 260 195 369 Antisense
ATGGGTCTGGTCAGTGCTTGTCTAT 43 51 446 Antisense
TGATATTACCTGTGATGCTCTGACG 402 563 498 Antisense
Sequence Source Affymetrix Proprietary Database