[Home] | [Total List]

[177800_s_at]

Description T04D3.1 /REP_DB=WormBase Gene ID /WP=CE13153 /TR=O18697 /GB=CAB03285.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 38      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 26
(3)
A 		13.3
(-0.9)
A 		6.6
(-3)
A 		16.9
(0.2)
A 		19
B 13.4
(0.6)
A 		11.7
(-1.1)
A 		15.7
(3)
A 		9.9
(-3)
A 		6
C 13.1
(-0.2)
A 		16.2
(3)
A 		10.3
(-3)
A 		14
(0.8)
A 		6
avr 17.5
(3) 		13.7
(-0.5) 		10.9
(-3) 		13.6
(-0.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 18.5
(3)
A 		7.9
(-3)
A 		9.5
(-2.1)
A 		12.7
(-0.3)
A 		9.1
(-2.3)
A 		12.2
(-0.6)
A 		11
B 61.9
(3)
A 		13
(-3)
A 		15.9
(-2.6)
A 		16
(-2.6)
A 		27
(-1.3)
A 		57.5
(2.5)
A 		49
C 12.1
(-2.5)
A 		8.2
(-2.8)
A 		12.5
(-2.4)
A 		5.1
(-3)
A 		5.9
(-2.9)
A 		84.9
(3)
A 		80
avr 30.8
(0) 		9.7
(-3) 		12.6
(-2.6) 		11.3
(-2.8) 		14
(-2.4) 		51.5
(3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 9.5
(3)
A 		2.9
(-2.1)
A 		1.7
(-3)
A 		2.5
(-2.4)
A 		8
B 4.3
(3)
A 		2.9
(-0.8)
A 		3.6
(1.1)
A 		2.1
(-3)
A 		2
C 4.3
(2.2)
A 		4.6
(3)
A 		3.6
(0.3)
A 		2.4
(-3)
A 		2
avr 6
(3) 		3.5
(-1.1) 		3
(-1.9) 		2.3
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 3.4
(3)
A 		2.8
(0.2)
A 		2.1
(-3)
A 		3.2
(2.1)
A 		2.7
(-0.2)
A 		3
(1.2)
A 		1
B 21.6
(3)
A 		4.3
(-2.9)
A 		3.9
(-3)
A 		4.2
(-2.9)
A 		11
(-0.6)
A 		21.5
(3)
A 		18
C 4.5
(-2.2)
A 		2.5
(-2.7)
A 		3.2
(-2.5)
A 		1
(-3)
A 		1.9
(-2.8)
A 		28.4
(3)
A 		27
avr 9.8
(-0.2) 		3.2
(-2.8) 		3.1
(-2.9) 		2.8
(-3) 		5.2
(-2) 		17.6
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177800_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1413
Sequence Type Exemplar sequence
Representative Public ID T04D3.1 NCBI
Target Description T04D3.1 /REP_DB=WormBase Gene ID /WP=CE13153 /TR=O18697 /GB=CAB03285.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060939(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060939 NCBI Caenorhabditis elegans T04D3.1 (T04D3.1) mRNA, complete cds. 11/11 None
SNAP00000016259 ENSEMBL cdna:SNAP chromosome:CEL140:I:13310987:13313284:-1 11/11 None
GENEFINDER00000016274 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13311140:13312411:-1 9/11 None
T04D3.1 ENSEMBL cdna:known chromosome:CEL140:I:13310895:13312423:-1 gene:T04D3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13310917-13312342(-) 95.31 100.0
Public Domain and Genome References
Gene Title
Ensembl T04D3.1
Entrez Gene 173197 Entrez gene
SwissProt O18697 EMBL-EBI
WormBase CE13153 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03285 Hypothetical protein T04D3.1 [Caenorhabditis elegans] ref|NP_493340.1| T04D3.1 [Caenorhabditis elegans] 0.0
blast CAB04980 Hypothetical protein ZK1053.4 [Caenorhabditis elegans] ref|NP_493323.1| ZK1053.4 [Caenorhabditis elegans] 8.0E-62
blast CAB04980 Hypothetical protein ZK1053.4 [Caenorhabditis elegans] ref|NP_493323.1| ZK1053.4 [Caenorhabditis elegans] 9.0E-62
blast CAB04980 Hypothetical protein ZK1053.4 [Caenorhabditis elegans] ref|NP_493323.1| ZK1053.4 [Caenorhabditis elegans] 1.0E-61
blast CAB04977 Hypothetical protein ZK1053.3 [Caenorhabditis elegans] ref|NP_493324.1| ZK1053.3 [Caenorhabditis elegans] 6.0E-49
blast CAB04977 Hypothetical protein ZK1053.3 [Caenorhabditis elegans] ref|NP_493324.1| ZK1053.3 [Caenorhabditis elegans] 7.0E-49
Sequence
Target Sequence 
>C. ELEGANS:177800_S_AT
gatcttctccccaagtatgcagagttttgcgaagagattcaggcttatgtgattcacgtc
ttcaactccttcacagatcgcatggagcaatatgtcttcgactcgaagattcagggattt
gttgaagtgaatcagccagagctgaagtatgactcatcgaaggatcaggatccgacttcg
agcatcttcttcgttctcaaagggacaacagtgatcatgaggggtgcacaaggaagactg
aagaaggaggtatattgctcgatcaaaaaacatttcgtggaggttcccaattcggtgatc
aagagttttgatactcagtttatggagaagaagcagaagatggacaagaagaagaaggcc
aaaaagatcaagaagtccaagaagaaggcatccaaagaatctcaagagttggatgtcttg
gtcgagaagatccgtctttgtgatgatccgttttctgatggcccatcttgctcaacttct
ccagatattccggaggatgccccagacgatggcatgtcaattctcaaacaaaaattcgtg
gaaagcctgacaactctctacggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTTCTCCCCAAGTATGCAGAGT 648 419 769 Antisense
TATGTGATTCACGTCTTCAACTCCT 37 657 814 Antisense
TTCAACTCCTTCACAGATCGCATGG 52 687 829 Antisense
TCAGGATCCGACTTCGAGCATCTTC 46 623 933 Antisense
GCATCTTCTTCGTTCTCAAAGGGAC 53 309 950 Antisense
TTCGTGGAGGTTCCCAATTCGGTGA 326 691 1042 Antisense
TGATGATCCGTTTTCTGATGGCCCA 366 567 1209 Antisense
TTCTGATGGCCCATCTTGCTCAACT 676 693 1221 Antisense
TGCTCAACTTCTCCAGATATTCCGG 77 581 1237 Antisense
GCCCCAGACGATGGCATGTCAATTC 543 285 1267 Antisense
GGAAAGCCTGACAACTCTCTACGGC 118 527 1308 Antisense
Sequence Source Affymetrix Proprietary Database