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[177799_at]

Description Y7A5A.2 /REP_DB=WormBase Gene ID /WP=CE21327 /TR=Q9XVZ1 /GB=CAA22462.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 63      4grp_high_8_8 > 55      6grp_total > 62      4grp_total > 43      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 66
(0.4)
P 		73.4
(1.9)
P 		49.2
(-3)
A 		79.1
(3)
P 		30
B 71.9
(-1.5)
P 		101.1
(3)
P 		97
(2.4)
P 		62.1
(-3)
P 		39
C 78.1
(3)
P 		63.1
(-3)
P 		65.9
(-1.9)
P 		76
(2.2)
P 		15
avr 72
(-2.1) 		79.2
(3) 		70.7
(-3) 		72.4
(-1.8) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 62.6
(-2.4)
A 		80.9
(-1.4)
P 		166.9
(3)
P 		74.7
(-1.8)
P 		113.2
(0.2)
P 		50.8
(-3)
A 		116
B 80.5
(-3)
P 		98.5
(-0.2)
P 		119.7
(3)
P 		101.4
(0.2)
P 		105.2
(0.8)
P 		94.8
(-0.8)
P 		39
C 66.1
(-2.6)
P 		109.3
(1.7)
P 		66.8
(-2.6)
P 		122.3
(3)
P 		62.6
(-3)
P 		87.7
(-0.5)
P 		60
avr 69.7
(-3) 		96.2
(0.3) 		117.8
(3) 		99.5
(0.7) 		93.7
(-0) 		77.8
(-2) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 24
(3)
P 		15.9
(-0.9)
P 		12.9
(-2.4)
A 		11.6
(-3)
P 		12
B 22.9
(1.9)
P 		25
(3)
P 		22.5
(1.7)
P 		13.2
(-3)
P 		12
C 25.8
(3)
P 		18.1
(-0.6)
P 		23
(1.7)
P 		12.8
(-3)
P 		13
avr 24.2
(3) 		19.7
(0.7) 		19.5
(0.6) 		12.5
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 11.5
(-3)
A 		28.8
(1.2)
P 		36.4
(3)
P 		18.9
(-1.2)
P 		34.2
(2.5)
P 		12.4
(-2.8)
A 		25
B 28
(-2.6)
P 		32.8
(-0.8)
P 		29.1
(-2.2)
P 		26.9
(-3)
P 		42.8
(3)
P 		35.3
(0.2)
P 		16
C 24.5
(-0.3)
P 		33.4
(3)
P 		17
(-3)
P 		24.6
(-0.2)
P 		20.2
(-1.8)
P 		29.3
(1.5)
P 		16
avr 21.3
(-3) 		31.7
(2.6) 		27.5
(0.4) 		23.5
(-1.8) 		32.4
(3) 		25.7
(-0.6) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177799_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17308
Sequence Type Exemplar sequence
Representative Public ID Y7A5A.2 NCBI
Target Description Y7A5A.2 /REP_DB=WormBase Gene ID /WP=CE21327 /TR=Q9XVZ1 /GB=CAA22462.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078194(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078194 NCBI Caenorhabditis elegans Y7A5A.2 (Y7A5A.2) mRNA, complete cds. 11/11 None
SNAP00000028076 ENSEMBL cdna:SNAP chromosome:CEL140:X:15771735:15772647:-1 9/11 None
GENEFINDER00000028097 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15771735:15772647:-1 11/11 None
Y7A5A.2.2 ENSEMBL cdna:known chromosome:CEL140:X:15771635:15772653:-1 gene:Y7A5A.2 11/11 None
Y7A5A.2.1 ENSEMBL cdna:known chromosome:CEL140:X:15771670:15772653:-1 gene:Y7A5A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15771734-15772647(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y7A5A.2
Entrez Gene 189381 Entrez gene
SwissProt Q9XVZ1 EMBL-EBI
WormBase CE21327 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22462 Hypothetical protein Y7A5A.2 [Caenorhabditis elegans] ref|NP_510595.1| Y7A5A.2 [Caenorhabditis elegans] 2.0E-78
blast CAA22462 Hypothetical protein Y7A5A.2 [Caenorhabditis elegans] ref|NP_510595.1| Y7A5A.2 [Caenorhabditis elegans] 1.0E-51
Sequence
Target Sequence 
>C. ELEGANS:177799_AT
ataaacgacagataccagattccaaaacacaactttttcactcctgaagacgcaacgacc
tgggctgttattcatagagcacgattttggaacgaccgttttcaagacttgttggattct
gaaaaggttttagtttcaaaaaatgttccgttcaaagttcttaacgaatacagcagtgat
ctctcaacaaaatgtctcaaaaaatgtgaagctgaaagaaaggaaaacattttgcaacaa
atacagttttcggaagtcctccaaagacaccaaaaaccaaacttattcggaaattcaatc
gtttctctgagaatgctaaattctctagaaatgaacgaagtgcacaaaaaggcgttgaaa
cgtgaaatgccaaagctgttgtcaagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAAACGACAGATACCAGATTCCAA 357 25 25 Antisense
GATACCAGATTCCAAAACACAACTT 495 423 35 Antisense
TCACTCCTGAAGACGCAACGACCTG 201 627 62 Antisense
GCAACGACCTGGGCTGTTATTCATA 322 319 76 Antisense
AGAGCACGATTTTGGAACGACCGTT 671 67 100 Antisense
GAACGACCGTTTTCAAGACTTGTTG 558 347 114 Antisense
ACGAATACAGCAGTGATCTCTCAAC 197 93 188 Antisense
GTGATCTCTCAACAAAATGTCTCAA 468 483 200 Antisense
TACAGTTTTCGGAAGTCCTCCAAAG 100 643 266 Antisense
TCGGAAATTCAATCGTTTCTCTGAG 298 605 311 Antisense
GAAATGCCAAAGCTGTTGTCAAGTG 284 359 388 Antisense
Sequence Source Affymetrix Proprietary Database