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[177798_at]

Description F10C2.3 /REP_DB=WormBase Gene ID /WP=CE09307 /TR=P90833 /GB=CAB04082.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 29      6grp_total > 58      4grp_total > 18      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 138
(-3)
P 		171.6
(-2.1)
A 		139.8
(-2.9)
P 		351.2
(3)
A 		213
B 179.1
(-2.9)
P 		240.4
(0.9)
M 		177.3
(-3)
P 		273.5
(3)
P 		96
C 169.7
(-2.7)
P 		270.3
(3)
P 		164.2
(-3)
P 		254.6
(2.1)
P 		106
avr 162.3
(-2.9) 		227.4
(0) 		160.4
(-3) 		293.1
(3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 215.2
(0.7)
M 		116.6
(-3)
P 		122.8
(-2.8)
A 		149.5
(-1.8)
P 		136.4
(-2.3)
A 		278.6
(3)
P 		162
B 184
(-0.7)
P 		117.2
(-3)
A 		129.8
(-2.6)
A 		125.9
(-2.7)
A 		181
(-0.8)
A 		294.1
(3)
P 		177
C 181.7
(0.4)
P 		107.9
(-3)
A 		151.9
(-0.9)
A 		124.5
(-2.2)
A 		120.4
(-2.4)
P 		236.3
(3)
P 		128
avr 193.6
(0.1) 		113.9
(-3) 		134.8
(-2.2) 		133.3
(-2.3) 		145.9
(-1.8) 		269.7
(3) 		156
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 50.2
(2.5)
P 		37.2
(-2.7)
A 		36.5
(-3)
P 		51.4
(3)
A 		15
B 57.1
(2.2)
P 		59.4
(3)
M 		41.1
(-3)
P 		58.3
(2.6)
P 		18
C 56.2
(-0.7)
P 		77.7
(3)
P 		57.2
(-0.5)
P 		42.9
(-3)
P 		35
avr 54.5
(1.4) 		58.1
(3) 		44.9
(-3) 		50.9
(-0.3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 39.7
(-1.1)
M 		41.5
(-0.8)
P 		26.7
(-3)
A 		37.9
(-1.4)
P 		41.2
(-0.9)
A 		67.8
(3)
P 		41
B 64
(-0.5)
P 		39
(-2.4)
A 		31.5
(-3)
A 		33.3
(-2.9)
A 		73.5
(0.2)
A 		109.7
(3)
P 		78
C 67.4
(1.7)
P 		32.9
(-2.1)
A 		38.7
(-1.5)
A 		25
(-3)
A 		39
(-1.4)
P 		79.1
(3)
P 		54
avr 57
(-0.2) 		37.8
(-2.4) 		32.3
(-3) 		32.1
(-3) 		51.2
(-0.9) 		85.5
(3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177798_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14374
Sequence Type Exemplar sequence
Representative Public ID F10C2.3 NCBI
Target Description F10C2.3 /REP_DB=WormBase Gene ID /WP=CE09307 /TR=P90833 /GB=CAB04082.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073614 NCBI Caenorhabditis elegans F10C2.3 (F10C2.3) mRNA, complete cds. 11/11 None
F10C2.3 ENSEMBL cdna:known chromosome:CEL140:V:12023820:12026179:1 gene:F10C2.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025555 8/11 Cross Hyb Matching Probes None
GENEFINDER00000025569 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12023826-12026166(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10C2.3
Entrez Gene 179650 Entrez gene
SwissProt P90833 EMBL-EBI
WormBase CE31905 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00102 Hypothetical protein F10C2.3 [Caenorhabditis elegans] emb|CAB04082.2| Hypothetical protein F10C2.3 [Caenorhabditis elegans] ref|NP_506015.2| F10C2.3 [Caenorhabditis elegans] 0.0
blast CAE75371 Hypothetical protein CBG23355 [Caenorhabditis briggsae] 0.0
blast CAA98260 Hypothetical protein F15H10.7 [Caenorhabditis elegans] ref|NP_505674.1| F15H10.7 [Caenorhabditis elegans] 7.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506015.2 1 7-29
F10C2.3 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:177798_AT
ggggtgaaagtctgtttcttcccataaaggaccgaaattgtgaaaccgcacacattccgg
aagagttttgtgtttgtgacactgaagttccgttgaatgtgtctgcgaatgctcaaattc
gaacaatggctgaagattttgccaaggatatcaatcaacgactagatccacaccctcaat
gtgtacaactttatttgaaaaatgtgatttcggtaagccaagttggagatgtgaaagagc
aaagatatcgatttacaattgaggtatccccttcaaatgcaatattcgaagcccttcttt
tatatgatcctttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGTGAAAGTCTGTTTCTTCCCAT 482 489 1304 Antisense
GTCTGTTTCTTCCCATAAAGGACCG 512 471 1313 Antisense
GTGAAACCGCACACATTCCGGAAGA 96 483 1343 Antisense
GTGTTTGTGACACTGAAGTTCCGTT 270 483 1373 Antisense
GAAGTTCCGTTGAATGTGTCTGCGA 522 337 1387 Antisense
GAATGTGTCTGCGAATGCTCAAATT 484 331 1398 Antisense
TCAATCAACGACTAGATCCACACCC 459 633 1454 Antisense
GATCCACACCCTCAATGTGTACAAC 473 415 1468 Antisense
TGAGGTATCCCCTTCAAATGCAATA 619 565 1563 Antisense
AAATGCAATATTCGAAGCCCTTCTT 647 119 1578 Antisense
AGCCCTTCTTTTATATGATCCTTTT 343 83 1593 Antisense
Sequence Source Affymetrix Proprietary Database