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[177797_at]

Description K01A6.3 /REP_DB=WormBase Gene ID /WP=CE06036 /TR=Q21076 /GB=CAA92966.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 6.2
(-2.4)
A 		2.3
(-3)
A 		20.7
(-0.2)
A 		42.1
(3)
A 		40
B 2.5
(-3)
A 		42.7
(3)
A 		37.3
(2.2)
A 		13.6
(-1.3)
A 		40
C 22.1
(-0.4)
A 		21.3
(-0.6)
A 		11.1
(-3)
A 		36.8
(3)
A 		26
avr 10.3
(-3) 		22.1
(0.5) 		23
(0.7) 		30.8
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 7.4
(-2.1)
A 		3.1
(-3)
A 		30.9
(3)
A 		4.3
(-2.7)
A 		15.3
(-0.4)
A 		3.5
(-2.9)
A 		28
B 10.4
(-1)
A 		25.3
(3)
A 		11.6
(-0.7)
A 		15.7
(0.4)
A 		23.1
(2.4)
A 		2.8
(-3)
A 		23
C 16.8
(0.4)
A 		5.2
(-2.1)
A 		3.1
(-2.6)
A 		5.4
(-2.1)
A 		1.1
(-3)
A 		28.7
(3)
A 		28
avr 11.5
(-0.3) 		11.2
(-0.6) 		15.2
(3) 		8.5
(-3) 		13.2
(1.2) 		11.7
(-0.1) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.2
(-1.2)
A 		0.5
(-3)
A 		5.4
(2.2)
A 		6.2
(3)
A 		6
B 0.8
(-3)
A 		10.5
(3)
A 		8.6
(1.8)
A 		2.9
(-1.7)
A 		10
C 7.3
(3)
A 		6.1
(0.9)
A 		3.9
(-3)
A 		6.2
(1.1)
A 		3
avr 3.4
(-3) 		5.7
(2.3) 		6
(3) 		5.1
(0.9) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.4
(-2.5)
A 		1.1
(-2.8)
A 		6.7
(3)
A 		1.1
(-2.8)
A 		4.6
(0.8)
A 		0.9
(-3)
A 		6
B 3.6
(-1.1)
A 		8.4
(2.3)
A 		2.8
(-1.7)
A 		4.2
(-0.7)
A 		9.4
(3)
A 		1
(-3)
A 		8
C 6.2
(0.8)
A 		1.6
(-2.2)
A 		0.8
(-2.7)
A 		1.1
(-2.5)
A 		0.4
(-3)
A 		9.6
(3)
A 		9
avr 3.7
(0.6) 		3.7
(0.6) 		3.4
(-0.1) 		2.1
(-3) 		4.8
(3) 		3.8
(0.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177797_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9382
Sequence Type Exemplar sequence
Representative Public ID K01A6.3 NCBI
Target Description K01A6.3 /REP_DB=WormBase Gene ID /WP=CE06036 /TR=Q21076 /GB=CAA92966.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069819(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069819 NCBI Caenorhabditis elegans K01A6.3 (K01A6.3) mRNA, complete cds. 11/11 None
K01A6.3 ENSEMBL cdna:known chromosome:CEL140:IV:11718993:11720694:1 gene:K01A6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11718998-11720700(+) 98.86 100.0
Public Domain and Genome References
Gene Title
Ensembl K01A6.3
Entrez Gene 186822 Entrez gene
SwissProt Q21076 EMBL-EBI
WormBase CE06036 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92966 Hypothetical protein K01A6.3 [Caenorhabditis elegans] ref|NP_502220.1| K01A6.3 [Caenorhabditis elegans] 1.0E-152
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502220.1 3 58-80,226-243,263-282
K01A6.3 3 58-80,226-243,263-282
Sequence
Target Sequence 
>C. ELEGANS:177797_AT
ttcttttctagtgttccctcgaaataatactttgcgaaaaaatacattcccacacttcaa
ctcaaaaaagtctagcaatgttacttttaatttccgacaattagcgagttttgaaattaa
agaaattgccgaaaattcgattttcgttatttcgattttccgtcaggcatttctgttcgt
ttccctatcttctcgccagattttcttgttttttttaccgggcaccagtagtatttctca
tgatacaaattgcttttactctatctacaaaagaaacacacggaaaagttcatatgtctt
ctttttcttcttcattttcttctcactctctaaatcgtttccggaacacgacgatcggac
gtatgtatatccacacagaaatacagcaaatgagtgtgtcggacagtcaccgatccttgg
atatttgtttctctttttctcaatgttctact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTTTCTAGTGTTCCCTCGAAAT 389 689 402 Antisense
TCGTTATTTCGATTTTCCGTCAGGC 183 605 545 Antisense
TCCGTCAGGCATTTCTGTTCGTTTC 420 593 560 Antisense
TCTTCTCGCCAGATTTTCTTGTTTT 526 617 589 Antisense
ACCGGGCACCAGTAGTATTTCTCAT 598 87 618 Antisense
ACAAATTGCTTTTACTCTATCTACA 539 111 646 Antisense
AGTTCATATGTCTTCTTTTTCTTCT 144 65 688 Antisense
TCACTCTCTAAATCGTTTCCGGAAC 219 571 724 Antisense
TGTCGGACAGTCACCGATCCTTGGA 184 557 798 Antisense
GATCCTTGGATATTTGTTTCTCTTT 13 417 813 Antisense
TTTCTCTTTTTCTCAATGTTCTACT 398 671 829 Antisense
Sequence Source Affymetrix Proprietary Database