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[177796_at]

Description C11H1.5 /REP_DB=WormBase Gene ID /WP=CE05264 /TR=Q17910 /GB=CAA94115.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 42      6grp_total > 42      4grp_total > 56      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1477
1 2 3 4 range
A 410.4
(-2.3)
P 		1099.1
(0.5)
P 		1691.9
(3)
P 		246.5
(-3)
P 		1445
B 363.8
(-2.4)
P 		1355.8
(1.7)
P 		1671.2
(3)
P 		215.4
(-3)
P 		1456
C 444.8
(-2.2)
P 		1223.3
(1.1)
P 		1651.9
(3)
P 		264.6
(-3)
P 		1387
avr 406.3
(-2.3) 		1226.1
(1.1) 		1671.7
(3) 		242.2
(-3) 		1430

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 617
1 2 3 4 5 6 range
A 631.2
(-0.9)
P 		805.3
(1.4)
P 		921.6
(3)
P 		701.4
(0)
P 		556.9
(-2)
P 		479.6
(-3)
P 		442
B 850.3
(0.6)
P 		778.7
(-0.1)
P 		1096.2
(3)
P 		867.9
(0.8)
P 		692.2
(-0.9)
P 		480.8
(-3)
P 		615
C 847.9
(2.3)
P 		828.1
(2)
P 		887.1
(3)
P 		720.1
(0.2)
P 		696.1
(-0.2)
P 		531.7
(-3)
P 		355
avr 776.5
(0.6) 		804
(0.9) 		968.3
(3) 		763.1
(0.4) 		648.4
(-1.1) 		497.4
(-3) 		471
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 540
1 2 3 4 range
A 149.4
(-1.3)
P 		238.6
(-0)
P 		442.3
(3)
P 		36.1
(-3)
P 		406
B 116
(-1.8)
P 		334.9
(2.1)
P 		387.3
(3)
P 		45.9
(-3)
P 		341
C 147.2
(-1.8)
P 		351.7
(0.5)
P 		575.7
(3)
P 		44.6
(-3)
P 		531
avr 137.5
(-1.7) 		308.4
(0.7) 		468.4
(3) 		42.2
(-3) 		426

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 116.4
(-3)
P 		286.4
(3)
P 		200.7
(-0)
P 		177.9
(-0.8)
P 		168.1
(-1.2)
P 		116.8
(-3)
P 		170
B 295.9
(3)
P 		259.2
(1.1)
P 		266.2
(1.5)
P 		229.9
(-0.4)
P 		281.2
(2.2)
P 		179.3
(-3)
P 		117
C 314.3
(3)
P 		252.7
(0.8)
P 		225.8
(-0.1)
P 		144.8
(-3)
P 		225.2
(-0.2)
P 		178
(-1.8)
P 		170
avr 242.2
(1.7) 		266.1
(3) 		230.9
(1) 		184.2
(-1.5) 		224.8
(0.7) 		158
(-3) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177796_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17346
Sequence Type Exemplar sequence
Representative Public ID C11H1.5 NCBI
Target Description C11H1.5 /REP_DB=WormBase Gene ID /WP=CE05264 /TR=Q17910 /GB=CAA94115.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029220(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029220 NCBI Caenorhabditis elegans C11H1.9a (C11H1.9) mRNA, complete cds. 11/11 None
SNAP00000018163 ENSEMBL cdna:SNAP chromosome:CEL140:X:14318270:14320260:-1 11/11 None
GENEFINDER00000018167 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14318270:14320260:-1 11/11 None
C11H1.9a ENSEMBL cdna:known chromosome:CEL140:X:14318052:14320260:-1 gene:C11H1.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029221 8/11 Cross Hyb Matching Probes None
C11H1.9b 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
3564775 2 1 NM_001029220 177796_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14318269-14320260(-) 100.0 100.0
Public Domain and Genome References
Ensembl C11H1.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH60748 Hypothetical protein C11H1.9a [Caenorhabditis elegans] ref|NP_001024391.1| C11H1.9a [Caenorhabditis elegans] 0.0
blast CAE63006 Hypothetical protein CBG07245 [Caenorhabditis briggsae] 0.0
blast CAH60749 Hypothetical protein C11H1.9b [Caenorhabditis elegans] ref|NP_001024392.1| C11H1.9b [Caenorhabditis elegans] 1.0E-127
Sequence
Target Sequence 
>C. ELEGANS:177796_AT
aggcgatgatgccgactggtttctcggagaaattccgtctccacgacaggcacttcatcg
agacgctcaccgaagacattaatattgacgatattccagttagccttgggggaaacgatg
cggaaatcacattcactggagctattaaaattgatccgaacaattactggcgagtggata
atgccgatctaatcgatgctcttgaaggatttcatgttggagcccgtaaaaaccgccatg
tggtagtcaatgttacttctgcaaaagacctcaagtggtacttttccacggacggagaca
tctactttggtatattttttgagggagacgccacaaataacaatgtcgaggaaaatgagc
caaatctcgatagtatggaaatggtgtatccttggctcaaaattacggcgaaactcgtgc
acgaaatcgatggaattagcatgaacagaattggaaaatatcatattgtattctgcaaca
aacattcctggattcaccggcggtgtgttcagttctatggacagatccatgacaacgctg
agaacacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGCGATGATGCCGACTGGTTTCTC 462 53 677 Antisense
CTCCACGACAGGCACTTCATCGAGA 231 235 715 Antisense
TTCATCGAGACGCTCACCGAAGACA 22 689 730 Antisense
ATTGACGATATTCCAGTTAGCCTTG 173 5 760 Antisense
GAAGGATTTCATGTTGGAGCCCGTA 633 331 880 Antisense
GGTACTTTTCCACGGACGGAGACAT 168 383 953 Antisense
GAAATGGTGTATCCTTGGCTCAAAA 662 361 1054 Antisense
AATTACGGCGAAACTCGTGCACGAA 319 173 1077 Antisense
ACAAACATTCCTGGATTCACCGGCG 504 111 1154 Antisense
CCGGCGGTGTGTTCAGTTCTATGGA 709 263 1173 Antisense
GATCCATGACAACGCTGAGAACACC 83 417 1200 Antisense
Sequence Source Affymetrix Proprietary Database