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[177795_at]

Description T01C1.3 /REP_DB=WormBase Gene ID /WP=CE03594 /TR=Q22051 /GB=CAA92009.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 33      6grp_total > 07      4grp_total > 38      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 210
(3)
P 		162.1
(0.7)
P 		82.7
(-3)
A 		119.7
(-1.3)
P 		127
B 221.2
(3)
P 		136.1
(-1.2)
M 		100.6
(-3)
A 		131.3
(-1.5)
P 		121
C 222.2
(3)
P 		105.1
(-3)
P 		121.4
(-2.2)
P 		118.1
(-2.3)
P 		117
avr 217.8
(3) 		134.4
(-1.3) 		101.6
(-3) 		123
(-1.9) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 190.9
(3)
P 		139.7
(0.7)
P 		102
(-1)
P 		56.9
(-3)
A 		79.3
(-2)
A 		92.5
(-1.4)
P 		134
B 168.3
(3)
P 		126.6
(0.5)
P 		97
(-1.2)
A 		71.4
(-2.7)
A 		66.9
(-3)
P 		89.3
(-1.7)
P 		101
C 218.3
(3)
P 		88
(-2.3)
P 		171.7
(1.1)
P 		113.9
(-1.2)
A 		97.4
(-1.9)
A 		69.4
(-3)
P 		149
avr 192.5
(3) 		118.1
(-1) 		123.6
(-0.7) 		80.7
(-3) 		81.2
(-3) 		83.7
(-2.8) 		112
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 76.5
(3)
P 		35.2
(-1.2)
P 		21.6
(-2.6)
A 		17.5
(-3)
P 		59
B 70.5
(3)
P 		33.6
(-1.7)
M 		23.3
(-3)
A 		28
(-2.4)
P 		47
C 73.6
(3)
P 		30.2
(-1.8)
P 		42.3
(-0.5)
P 		19.9
(-3)
P 		54
avr 73.5
(3) 		33
(-1.7) 		29.1
(-2.2) 		21.8
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 35.2
(0.5)
P 		49.7
(3)
P 		22.2
(-1.7)
P 		14.4
(-3)
A 		23.9
(-1.4)
A 		22.5
(-1.6)
P 		35
B 58.6
(3)
P 		42.1
(0.5)
P 		23.6
(-2.3)
A 		18.9
(-3)
A 		27.2
(-1.7)
P 		33.3
(-0.8)
P 		40
C 80.9
(3)
P 		26.8
(-2.6)
P 		43.7
(-0.8)
P 		22.9
(-3)
A 		31.5
(-2.1)
A 		23.2
(-3)
P 		58
avr 58.2
(3) 		39.5
(0.2) 		29.8
(-1.3) 		18.7
(-3) 		27.5
(-1.7) 		26.3
(-1.8) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177795_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16544
Sequence Type Exemplar sequence
Representative Public ID T01C1.3 NCBI
Target Description T01C1.3 /REP_DB=WormBase Gene ID /WP=CE03594 /TR=Q22051 /GB=CAA92009.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077392(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077392 NCBI Caenorhabditis elegans T01C1.3 (T01C1.3) mRNA, complete cds. 11/11 None
SNAP00000031609 ENSEMBL cdna:SNAP chromosome:CEL140:X:10719691:10721498:-1 11/11 None
GENEFINDER00000031614 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10719691:10721971:-1 11/11 None
T01C1.3 ENSEMBL cdna:known chromosome:CEL140:X:10719691:10720602:-1 gene:T01C1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10719690-10720602(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01C1.3
Entrez Gene 187938 Entrez gene
WormBase CE03594 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92010 Hypothetical protein T01C1.2 [Caenorhabditis elegans] dbj|BAE45265.1| MBlk-1 Related factor-1 [Caenorhabditis elegans] 0.0
blast CAE60821 Hypothetical protein CBG04528 [Caenorhabditis briggsae] 1.0E-161
blast CAE60821 Hypothetical protein CBG04528 [Caenorhabditis briggsae] 1.0E-144
blast NP_509794 T01C1.2 [Caenorhabditis elegans] 4.0E-96
blast NP_509793 T01C1.3 [Caenorhabditis elegans] 2.0E-95
blast CAA92010 Hypothetical protein T01C1.2 [Caenorhabditis elegans] dbj|BAE45265.1| MBlk-1 Related factor-1 [Caenorhabditis elegans] 2.0E-95
blast NP_509793 T01C1.3 [Caenorhabditis elegans] 1.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR007889 EMBL-EBI Helix-turn-helix, Psq 7.5E-15
Pfam IPR007889 EMBL-EBI Helix-turn-helix, Psq 2.8E-7
Pfam IPR007889 EMBL-EBI Helix-turn-helix, Psq 7.5E-15
Pfam IPR007889 EMBL-EBI Helix-turn-helix, Psq 1.1E-11
Pfam IPR007889 EMBL-EBI Helix-turn-helix, Psq 7.5E-15
Sequence
Target Sequence 
>C. ELEGANS:177795_AT
ccaagctcacctgacagcacaaatagcagtttagaagggaccggtgagacgccggagatg
tctgacaagaagtcgtgttcccccttggaccccaagtggcttgagtctatctggcagaac
ttgttcaaaactcaaggaaatgtggtcccagtggatagtgcaaacatttctaacgttgat
acccatactcctacgccgatttcggagaagtctcagaaaatgcatggaaatgaggagtgg
aagaggagcaggccgaagagaggacaatatagaaaatatgacaaaaatgctctggacgaa
gctgtgagaagtgtccgtcgaggggaaatgactgttcatcgagcgggtagcttttttggt
gttcctcactccactcttgagtataaggttaaagaaagaaatttgatgcgaaaaaagaag
gactgcctctacagccatgactcttcaaccagtgaagatggtagccaacttgttacgtct
acaatttctgagaaatccgattcgtcttcccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAAGCTCACCTGACAGCACAAATA 26 277 19 Antisense
GTCTGACAAGAAGTCGTGTTCCCCC 590 471 78 Antisense
CCCCTTGGACCCCAAGTGGCTTGAG 79 261 99 Antisense
GTGGCTTGAGTCTATCTGGCAGAAC 657 491 114 Antisense
TCTAACGTTGATACCCATACTCCTA 565 611 187 Antisense
ATGACTGTTCATCGAGCGGGTAGCT 425 45 346 Antisense
GTAGCTTTTTTGGTGTTCCTCACTC 617 457 365 Antisense
TTCCTCACTCCACTCTTGAGTATAA 3 701 380 Antisense
AAAGAAGGACTGCCTCTACAGCCAT 469 123 432 Antisense
GATGGTAGCCAACTTGTTACGTCTA 168 407 475 Antisense
TGAGAAATCCGATTCGTCTTCCCAC 267 565 507 Antisense
Sequence Source Affymetrix Proprietary Database