[Home] | [Total List]

[177794_at]

Description T05B9.1 /REP_DB=WormBase Gene ID /WP=CE02310 /TR=Q22215 /GB=CAA88962.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 19      4grp_high_8_8 > 39      6grp_highest_nonorm > 98      6grp_total > 96      4grp_total > 40      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 399
(-2.4)
P 		379.3
(-3)
P 		564.3
(3)
P 		518.9
(1.5)
P 		185
B 396.7
(-3)
P 		454.2
(-0.6)
P 		539.9
(3)
P 		466.3
(-0.1)
P 		143
C 422.3
(-2.8)
P 		431.2
(-2.5)
P 		591.9
(3)
P 		416.3
(-3)
P 		176
avr 406
(-3) 		421.6
(-2.4) 		565.4
(3) 		467.2
(-0.7) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1701
1 2 3 4 5 6 range
A 237.9
(-3)
P 		365.3
(-2.3)
P 		521.8
(-1.5)
P 		944.7
(0.7)
P 		1383.4
(3)
P 		1277.7
(2.4)
P 		1146
B 234.7
(-3)
P 		326.9
(-2.7)
P 		628.4
(-1.5)
P 		825.5
(-0.8)
P 		1594.5
(2.1)
P 		1840.7
(3)
P 		1606
C 239.2
(-3)
P 		341.3
(-2.6)
P 		540.8
(-1.9)
P 		1058.6
(-0.1)
P 		1423.8
(1.2)
P 		1936
(3)
P 		1697
avr 237.3
(-3) 		344.5
(-2.6) 		563.7
(-1.6) 		942.9
(-0.1) 		1467.2
(2.1) 		1684.8
(3) 		1448
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 145.3
(2.8)
P 		82.3
(-2.5)
P 		147.5
(3)
P 		76
(-3)
P 		72
B 126.5
(3)
P 		112.2
(-0.2)
P 		125.1
(2.7)
P 		99.4
(-3)
P 		27
C 139.8
(0.1)
P 		124
(-0.6)
P 		206.3
(3)
P 		70.2
(-3)
P 		136
avr 137.2
(1.3) 		106.2
(-1.1) 		159.6
(3) 		81.9
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 643
1 2 3 4 5 6 range
A 43.9
(-3)
P 		129.9
(-1.6)
P 		113.6
(-1.9)
P 		239.6
(0.1)
P 		417.5
(3)
P 		311.1
(1.3)
P 		374
B 81.7
(-3)
P 		108.8
(-2.7)
P 		152.6
(-2.3)
P 		218.7
(-1.6)
P 		647.8
(2.6)
P 		686.4
(3)
P 		605
C 88.7
(-3)
P 		104.1
(-2.8)
P 		137.6
(-2.5)
P 		212.9
(-1.7)
P 		460.7
(1)
P 		648.1
(3)
P 		559
avr 71.4
(-3) 		114.3
(-2.5) 		134.6
(-2.2) 		223.7
(-1.1) 		508.7
(2.5) 		548.5
(3) 		477
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177794_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3936
Sequence Type Exemplar sequence
Representative Public ID T05B9.1 NCBI
Target Description T05B9.1 /REP_DB=WormBase Gene ID /WP=CE02310 /TR=Q22215 /GB=CAA88962.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064008(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064008 NCBI Caenorhabditis elegans T05B9.1 (T05B9.1) mRNA, complete cds. 11/11 None
SNAP00000021153 ENSEMBL cdna:SNAP chromosome:CEL140:II:11260207:11261098:-1 11/11 None
GENEFINDER00000021155 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11260207:11261098:-1 11/11 None
T05B9.1 ENSEMBL cdna:known chromosome:CEL140:II:11259993:11261162:-1 gene:T05B9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11260203-11261095(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05B9.1
Entrez Gene 174718 Entrez gene
SwissProt Q22215 EMBL-EBI
WormBase CE02310 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88962 Hypothetical protein T05B9.1 [Caenorhabditis elegans] ref|NP_496409.1| T05B9.1 [Caenorhabditis elegans] 1.0E-144
Sequence
Target Sequence 
>C. ELEGANS:177794_AT
ggatctcaaggctcagctggatttccaaatggcacactttcaatcgctctttgaagcaca
cgaaaaggaaattgccgatttgaaagctcgccaatatcaaaacaactcgattgccgcgca
gacaccaccaccagatgttcgtcaggaactgcgttcattcccgatggttaaacattcacg
agaaaatcccgagctgaggaatgtgccggtgttgattttctcaagatgcatgctctgcga
gactgatgagcacacaattcattcgtgtccgatttacaacacaaattcgaaaagatacga
aggcttcaaggataaaggactctgcagatcttgcgcacttccagcgaactccgatggatc
tgcaacttgtggaagaaattgcatgttttcgcgtcgcagatgcacaaactgctgggataa
gggaggtgacaaaagctatgtctatcacttggagttcacatgtcgatgggacgaaagacg
atcgcagaggacatcgccgttttcaactgatcactcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCTCAAGGCTCAGCTGGATTTC 92 513 225 Antisense
AATGGCACACTTTCAATCGCTCTTT 228 163 252 Antisense
ACCACCACCAGATGTTCGTCAGGAA 385 85 348 Antisense
TCAGGAACTGCGTTCATTCCCGATG 422 621 366 Antisense
GAATGTGCCGGTGTTGATTTTCTCA 690 331 423 Antisense
AGATGCATGCTCTGCGAGACTGATG 472 65 448 Antisense
GAGCACACAATTCATTCGTGTCCGA 526 389 472 Antisense
AAAGGACTCTGCAGATCTTGCGCAC 385 121 538 Antisense
AGCGAACTCCGATGGATCTGCAACT 48 79 567 Antisense
AATTGCATGTTTTCGCGTCGCAGAT 275 179 601 Antisense
TCGCCGTTTTCAACTGATCACTCGG 495 599 718 Antisense
Sequence Source Affymetrix Proprietary Database