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[177792_at] G-protein coupled receptor, srh family

Description F36D3.6 /REP_DB=WormBase Gene ID /WP=CE15970 /TR=O45461 /GB=CAB04317.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 22      6grp_cgc > 15      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 79.1
(-2.1)
P 		75.9
(-2.3)
A 		67.6
(-3)
A 		141.5
(3)
P 		74
B 106.5
(3)
P 		37.5
(-2.4)
A 		29.7
(-3)
A 		38.9
(-2.3)
P 		77
C 74.1
(1.3)
P 		46
(-2.5)
A 		42.5
(-3)
M 		86.7
(3)
P 		44
avr 86.6
(2.7) 		53.1
(-2.1) 		46.6
(-3) 		89
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 95
(3)
P 		38.2
(-2.4)
P 		32
(-3)
A 		36.4
(-2.6)
M 		47
(-1.6)
M 		64
(0)
A 		63
B 93.4
(3)
P 		84.1
(2.2)
P 		46.7
(-1)
M 		23.8
(-3)
A 		49.6
(-0.8)
P 		39.3
(-1.7)
A 		70
C 48.6
(-1.1)
A 		98.6
(3)
P 		44.1
(-1.4)
A 		93.6
(2.6)
A 		24.7
(-3)
A 		76.7
(1.2)
M 		74
avr 79
(3) 		73.6
(2.2) 		40.9
(-2.9) 		51.3
(-1.3) 		40.4
(-3) 		60
(0) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 28.8
(3)
P 		16.5
(-3)
A 		17.7
(-2.4)
A 		20.7
(-1)
P 		12
B 34
(3)
P 		9.3
(-2.5)
A 		6.9
(-3)
A 		8.3
(-2.7)
P 		27
C 24.5
(3)
P 		13.2
(-3)
A 		14.8
(-2.2)
M 		14.6
(-2.3)
P 		11
avr 29.1
(3) 		13
(-3) 		13.1
(-3) 		14.5
(-2.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 17.5
(3)
P 		13.6
(0.8)
P 		7
(-3)
A 		9.2
(-1.7)
M 		14.2
(1.1)
M 		15.6
(1.9)
A 		11
B 32.5
(3)
P 		28
(2)
P 		11.3
(-1.9)
M 		6.3
(-3)
A 		20.1
(0.2)
P 		14.6
(-1.1)
A 		26
C 18
(-0.3)
A 		30.1
(3)
P 		11.2
(-2.1)
A 		18.8
(-0.1)
A 		8
(-3)
A 		25.7
(1.8)
M 		22
avr 22.7
(2.5) 		23.9
(3) 		9.8
(-3) 		11.4
(-2.3) 		14.1
(-1.2) 		18.6
(0.7) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177792_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13107
Sequence Type Exemplar sequence
Representative Public ID F36D3.6 NCBI
Target Description F36D3.6 /REP_DB=WormBase Gene ID /WP=CE15970 /TR=O45461 /GB=CAB04317.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074776(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074776 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-136) (srh-136) mRNA, complete cds. 11/11 None
F36D3.6 ENSEMBL cdna:known chromosome:CEL140:V:16498576:16500178:-1 gene:F36D3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16498575-16500178(-) 96.02 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-136
Ensembl F36D3.6
Entrez Gene 185353 Entrez gene
SwissProt O45461 EMBL-EBI
WormBase CE33071 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04317 Hypothetical protein F36D3.6 [Caenorhabditis elegans] ref|NP_507177.2| Serpentine Receptor, class H family member (srh-136) [Caenorhabditis elegans] 0.0
blast CAA16167 Hypothetical protein F57E7.3 [Caenorhabditis elegans] ref|NP_507171.1| Serpentine Receptor, class H family member (srh-139) [Caenorhabditis elegans] 9.0E-84
blast CAA15967 Hypothetical protein Y6E2A.6 [Caenorhabditis elegans] ref|NP_506913.1| Serpentine Receptor, class H family member (srh-140) [Caenorhabditis elegans] 1.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507177.2 7 15-37,57-79,94-116,137-156,199-221,242-264,279-301
F36D3.6 7 15-37,57-79,94-116,137-156,199-221,242-264,279-301
Sequence
Target Sequence 
>C. ELEGANS:177792_AT
cgttacaatcgtctcatacgtcgagatgccgactctcaaatattaaccggactaataccc
gcgtactcagattcttttaactatgaagaacaaagactgtatattctgaaggagtaccct
tgtattccgccaagcttcttcgagaaacctgggtttttgatactatctgataatcccaga
aagttggcgtacactcttcttctattcataattatatttatgttacaaacactctatttc
ctaattcgagtattatttcatctgcaaaaaagtaaagctcactctgaaaagacggctcga
atgcagaaacaattattcaaagccctatgcattcaagtttcggtcccactggtgtttgca
gcagtaccatgcatttatatgaatatttctgcagcattttattatttaaacatgatgctt
tcaaatttttcattgctatggattcaaactcatgggatatgctcaacggtgacaatgctt
tgtgttcataaggcttatagaggagcaactgtgaagcttttctgtcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTACAATCGTCTCATACGTCGAG 208 247 478 Antisense
ATACGTCGAGATGCCGACTCTCAAA 643 21 493 Antisense
GACTAATACCCGCGTACTCAGATTC 62 367 527 Antisense
TGAAGGAGTACCCTTGTATTCCGCC 525 573 584 Antisense
TATTCCGCCAAGCTTCTTCGAGAAA 434 665 600 Antisense
ATCCCAGAAAGTTGGCGTACACTCT 649 37 650 Antisense
GTACACTCTTCTTCTATTCATAATT 398 461 666 Antisense
ACAAACACTCTATTTCCTAATTCGA 350 111 702 Antisense
AAGCCCTATGCATTCAAGTTTCGGT 675 147 797 Antisense
GTCCCACTGGTGTTTGCAGCAGTAC 410 475 820 Antisense
GCAACTGTGAAGCTTTTCTGTCGAA 521 317 982 Antisense
Sequence Source Affymetrix Proprietary Database