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[177790_at]

Description F31C3.3 /REP_DB=WormBase Gene ID /WP=CE17732 /TR=O62191 /GB=CAB07193.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_high_8_8 > 25      6grp_highest_nonorm > 90      6grp_total > 36      4grp_total > 38      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 280.6
(3)
P 		187
(-1.4)
P 		154.2
(-3)
P 		162.5
(-2.6)
A 		126
B 207.9
(2.3)
P 		176.1
(-1.4)
P 		163
(-3)
P 		213.6
(3)
P 		51
C 277.3
(3)
P 		205
(-1.2)
P 		174.9
(-3)
P 		196.4
(-1.7)
P 		102
avr 255.3
(3) 		189.4
(-1.3) 		164
(-3) 		190.8
(-1.2) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 198.8
(0.3)
P 		190.2
(-0)
P 		127.1
(-2.7)
P 		119.6
(-3)
P 		202.6
(0.5)
P 		261.9
(3)
P 		142
B 188.7
(2.1)
P 		206.3
(3)
P 		110.2
(-1.9)
P 		135.6
(-0.6)
P 		89.2
(-3)
P 		193.4
(2.3)
P 		117
C 212.8
(0.7)
P 		269.9
(3)
P 		227.5
(1.3)
P 		123
(-3)
P 		147
(-2)
P 		170.8
(-1)
P 		147
avr 200.1
(1.6) 		222.1
(3) 		154.9
(-1.2) 		126.1
(-3) 		146.3
(-1.7) 		208.7
(2.2) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 102.2
(3)
P 		40.6
(-1.7)
P 		40.3
(-1.7)
P 		23.8
(-3)
A 		78
B 66.3
(3)
P 		43.5
(-1.8)
P 		37.8
(-3)
P 		45.5
(-1.4)
P 		29
C 91.8
(3)
P 		58.9
(-0.4)
P 		61
(-0.1)
P 		33.1
(-3)
P 		59
avr 86.8
(3) 		47.7
(-1.5) 		46.4
(-1.6) 		34.1
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 36.7
(-1.7)
P 		67.7
(3)
P 		27.7
(-3)
P 		30.3
(-2.6)
P 		61.1
(2)
P 		63.8
(2.4)
P 		40
B 65.7
(2.2)
P 		68.7
(2.5)
P 		26.8
(-3)
P 		35.9
(-1.8)
P 		36.2
(-1.8)
P 		72.1
(3)
P 		45
C 78.9
(2.6)
P 		82.4
(3)
P 		57.9
(0.5)
P 		24.7
(-3)
P 		47.6
(-0.6)
P 		57.2
(0.4)
P 		58
avr 60.4
(1.2) 		72.9
(3) 		37.5
(-2) 		30.3
(-3) 		48.3
(-0.5) 		64.4
(1.8) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177790_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1117
Sequence Type Exemplar sequence
Representative Public ID F31C3.3 NCBI
Target Description F31C3.3 /REP_DB=WormBase Gene ID /WP=CE17732 /TR=O62191 /GB=CAB07193.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061224(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061224 NCBI Caenorhabditis elegans F31C3.3 (F31C3.3) mRNA, complete cds. 10/11 None
GENEFINDER00000023500 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:15048727:15058797:-1 10/11 None
SNAP00000023486 ENSEMBL cdna:SNAP chromosome:CEL140:I:15050003:15058797:-1 10/11 None
F31C3.3 ENSEMBL cdna:known chromosome:CEL140:I:15049565:15058278:-1 gene:F31C3.3 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:15050614-15058209(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F31C3.3
Entrez Gene 173375 Entrez gene
SwissProt O62191 EMBL-EBI
WormBase CE32399 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597259_AT similar to CG14967-PA cfa
CANINE:1592164_AT similar to CG14967-PA cfa
CANINE_2:CFAAFFX.28633.1.S1_AT similar to CG14967-PA cfa
DROSOPHILA_2:1641403_AT dm
DROSGENOME1:152138_AT dm
CHICKEN:GGA.14208.1.S1_S_AT similar to KIAA0100 protein gga
CHICKEN:GGAAFFX.25972.1.S1_AT similar to KIAA0100 protein gga
HG-U133A:201729_S_AT KIAA0100 gene product hs
HG-U133_PLUS_2:201729_S_AT KIAA0100 gene product hs
HG-U133A_2:201729_S_AT KIAA0100 gene product hs
HU35KSUBD:RC_R61557_AT KIAA0100 gene product hs
HUGENEFL:D43947_AT KIAA0100 gene product hs
U133_X3P:G7661903_3P_A_AT KIAA0100 gene product hs
U133_X3P:HS.151761.0.S1_3P_A_AT KIAA0100 gene product hs
HG-U133A_2:201728_S_AT KIAA0100 gene product hs
HG-U133_PLUS_2:201728_S_AT KIAA0100 gene product hs
HG-U133A:201728_S_AT KIAA0100 gene product hs
HG-U95AV2:39783_AT KIAA0100 gene product hs
HG-U95B:45521_S_AT KIAA0100 gene product hs
HG-U133_PLUS_2:231542_AT KIAA0100 gene product hs
HG-U133B:231542_AT KIAA0100 gene product hs
HG-U133_PLUS_2:231541_S_AT KIAA0100 gene product hs
HG-U133B:231541_S_AT KIAA0100 gene product hs
U133_X3P:HS.166433.0.S1_3P_AT KIAA0100 gene product hs
HG-U95E:84274_AT KIAA0100 gene product hs
HG-U95C:66204_AT KIAA0100 gene product hs
MOUSE430A_2:1455905_AT RIKEN cDNA 2610507B11 gene mm
MOE430A:1455905_AT RIKEN cDNA 2610507B11 gene mm
MOUSE430_2:1455905_AT RIKEN cDNA 2610507B11 gene mm
MU11KSUBB:MSA.2263.0_AT RIKEN cDNA 2610507B11 gene mm
MU11KSUBB:MSA.2263.0_G_AT RIKEN cDNA 2610507B11 gene mm
MG-U74AV2:98538_AT RIKEN cDNA 2610507B11 gene mm
MOE430A:1426820_AT RIKEN cDNA 2610507B11 gene mm
MOUSE430A_2:1426820_AT RIKEN cDNA 2610507B11 gene mm
MOUSE430_2:1426820_AT RIKEN cDNA 2610507B11 gene mm
MOUSE430_2:1447506_AT E1 protein mm
MOE430B:1447506_AT E1 protein mm
MU19KSUBB:TC30563_AT E1 protein mm
MU19KSUBB:TC34192_S_AT E1 protein mm
MU19KSUBB:TC34316_AT E1 protein mm
MU19KSUBB:TC34316_G_AT E1 protein mm
RG-U34B:RC_AI060132_AT similar to CG14967-PA (predicted) rn
RG-U34B:RC_AI010658_AT similar to CG14967-PA (predicted) rn
RAE230A:1398971_AT similar to CG14967-PA (predicted) rn
RAT230_2:1398971_AT similar to CG14967-PA (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4553 hydrolase activity, hydrolyzing O-glycosyl compounds inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07193 Hypothetical protein F31C3.3 [Caenorhabditis elegans] ref|NP_493625.2| F31C3.3 [Caenorhabditis elegans] 0.0
blast CAE72553 Hypothetical protein CBG19737 [Caenorhabditis briggsae] 0.0
blast EAA11765 ENSANGP00000007087 [Anopheles gambiae str. PEST] ref|XP_315477.2| ENSANGP00000007087 [Anopheles gambiae str. PEST] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002130 EMBL-EBI Peptidyl-prolyl cis-trans isomerase, cyclophilin type 1.6E-106
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000023500 1 7-29
SNAP00000023486 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:177790_AT
gttgaacatagctcccatggttgcagagattactcatcgattatttgataaaatgatgag
attcttttttcctggcaggaatattcatacgaatgataacctggatcatgaggaagaagt
ttcgaccttctcattcacacgaaaaattgccagcacacttagcatgcgaagcaataaatc
tgcgtcggagaagcttatgcttcagaaatctcttcacgaaaaggatgacattgatcgaat
gaaggagcgcgccgacaaagtcaatcattttatgtatatcaaaattccggaaggaaacaa
ggacaaaaacctgatagatgtgaaccaattcaacttcatattccccctctgtgaatacca
tgagcaaaattggacgtggctcgacttggcgttggctgtcaagcagcactgcaaacgagt
gctcgtacaacagtttatgaagcagaaattgttgagaaatcgaatttccaatttttctat
cgatcctattccacagggagtcagtgaggatgagaagaagcggatagcaaaaaattttcc
gctttttctgatcttaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGAACATAGCTCCCATGGTTGCA 332 439 5502 Antisense
ATGAGATTCTTTTTTCCTGGCAGGA 82 47 5557 Antisense
TCGACCTTCTCATTCACACGAAAAA 646 601 5623 Antisense
AATTGCCAGCACACTTAGCATGCGA 72 179 5646 Antisense
GAAGGAGCGCGCCGACAAAGTCAAT 160 335 5742 Antisense
TTCCCCCTCTGTGAATACCATGAGC 641 697 5842 Antisense
AAAATTGGACGTGGCTCGACTTGGC 451 127 5867 Antisense
GGCGTTGGCTGTCAAGCAGCACTGC 241 541 5889 Antisense
ACGAGTGCTCGTACAACAGTTTATG 541 93 5916 Antisense
TTTTTCTATCGATCCTATTCCACAG 500 675 5973 Antisense
ATTTTCCGCTTTTTCTGATCTTAAT 303 15 6035 Antisense
Sequence Source Affymetrix Proprietary Database