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[177789_at]

Description F57G8.2 /REP_DB=WormBase Gene ID /WP=CE19905 /TR=Q9XU86 /GB=CAB05537.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 40      6grp_cgc > 92      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 9.9
(-2.3)
A 		22.5
(3)
A 		8.1
(-3)
A 		10.5
(-2)
A 		14
B 10.7
(-3)
A 		14.7
(-1.2)
A 		24.4
(3)
A 		22.8
(2.3)
A 		14
C 7.1
(-3)
A 		10.8
(-2)
A 		29.3
(3)
A 		11.5
(-1.8)
A 		22
avr 9.2
(-3) 		16
(0.6) 		20.6
(3) 		14.9
(-0) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 9.3
(-3)
A 		16.3
(-1.7)
A 		24.3
(-0.3)
A 		12.8
(-2.4)
A 		14.1
(-2.1)
A 		42.3
(3)
A 		33
B 6.5
(-3)
A 		12.2
(-2.2)
A 		49.4
(3)
A 		10.1
(-2.5)
A 		6.5
(-3)
A 		6.8
(-3)
A 		43
C 11.1
(-1.6)
A 		23.4
(0.7)
A 		10.7
(-1.7)
A 		36.1
(3)
A 		11.2
(-1.6)
A 		3.5
(-3)
A 		33
avr 9
(-3) 		17.3
(-0.4) 		28.1
(3) 		19.7
(0.4) 		10.6
(-2.5) 		17.5
(-0.3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.6
(0.7)
A 		4.9
(3)
A 		2.1
(-1.9)
A 		1.5
(-3)
A 		3
B 3.4
(-3)
A 		3.6
(-2.5)
A 		5.6
(3)
A 		4.9
(1.1)
A 		2
C 2.3
(-2.7)
A 		3.1
(-2.1)
A 		10.2
(3)
A 		1.9
(-3)
A 		8
avr 3.1
(-2.4) 		3.9
(-0.9) 		6
(3) 		2.8
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.7
(-3)
A 		5.8
(-0.1)
A 		5.3
(-0.5)
A 		3.2
(-2)
A 		4.2
(-1.3)
A 		10.3
(3)
A 		9
B 2.3
(-3)
A 		4
(-1.9)
A 		12
(3)
A 		2.7
(-2.8)
A 		2.6
(-2.8)
A 		2.5
(-2.9)
A 		10
C 4.1
(-0.1)
A 		7.1
(2.8)
A 		2.7
(-1.5)
A 		7.3
(3)
A 		3.6
(-0.6)
A 		1.2
(-3)
A 		6
avr 2.7
(-3) 		5.6
(1.4) 		6.7
(3) 		4.4
(-0.5) 		3.5
(-1.8) 		4.7
(0) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177789_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14309
Sequence Type Exemplar sequence
Representative Public ID F57G8.2 NCBI
Target Description F57G8.2 /REP_DB=WormBase Gene ID /WP=CE19905 /TR=Q9XU86 /GB=CAB05537.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074725
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000042076 ENSEMBL cdna:SNAP chromosome:CEL140:V:16323437:16325676:-1 None
F57G8.8 ENSEMBL cdna:known chromosome:CEL140:V:16323380:16330060:-1 gene:F57G8.8 A 
NM_074725 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-36) (srv-36) mRNA, complete cds. None
GENEFINDER00000042083 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16321674:16330060:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002207 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16322094-16323957(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srv-36
Ensembl F57G8.8
Entrez Gene 186469 Entrez gene
SwissProt Q9XU94 EMBL-EBI
WormBase CE35184 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05529 Hypothetical protein F57G8.8 [Caenorhabditis elegans] ref|NP_507126.2| Serpentine Receptor, class V family member (srv-36) [Caenorhabditis elegans] 0.0
blast CAB05529 Hypothetical protein F57G8.8 [Caenorhabditis elegans] ref|NP_507126.2| Serpentine Receptor, class V family member (srv-36) [Caenorhabditis elegans] 1.0E-114
blast CAE56564 Hypothetical protein CBG24302 [Caenorhabditis briggsae] 6.0E-87
blast CAE56564 Hypothetical protein CBG24302 [Caenorhabditis briggsae] 8.0E-80
blast T22878 hypothetical protein F57G8.2 - Caenorhabditis elegans 1.0E-78
blast T22878 hypothetical protein F57G8.2 - Caenorhabditis elegans 2.0E-54
blast T22878 hypothetical protein F57G8.2 - Caenorhabditis elegans 4.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507126.2 7 10-31,43-65,75-97,102-124,158-180,210-232,263-285
F57G8.8 7 10-31,43-65,75-97,102-124,158-180,210-232,263-285
SNAP00000042076 2 19-41,70-92
GENEFINDER00000042083 5 10-32,45-67,102-124,154-176,207-229
Sequence
Target Sequence 
>C. ELEGANS:177789_AT
gttggatgcgccggaggcgcggtcagcgtctggcaatcccgtcaaaaccgataccaggaa
gcccggctttgtatccacgtgctcttcttggctataatttccgccgccacatttgcctac
tatgtttttcaagcaatctattcggatcagttagatgtaggcgacgtcagtttacctgat
tctgactccaaatctgtgaatctgcagcaagaagatcttcgtgctcttcgtgtctggtat
ccgttggtttctggaaatatgagctttatcaacccgttgatgttgttgttattgaatcga
gatatccagaattgtttcaagaacttttgcaggggcaaaactggtgcctgtgtggcgccc
tcttccttcggattttttgcaaaattttttcagtttcaaactggattactgcttatttgt
cgccatcatcgacatttggatggtcgcctgggaaatctgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGATGCGCCGGAGGCGCGGTCA 655 435 52 Antisense
TGGCAATCCCGTCAAAACCGATACC 503 545 82 Antisense
CAGGAAGCCCGGCTTTGTATCCACG 209 207 106 Antisense
CTTCTTGGCTATAATTTCCGCCGCC 495 221 135 Antisense
GCCACATTTGCCTACTATGTTTTTC 310 279 157 Antisense
GATGTAGGCGACGTCAGTTTACCTG 114 405 205 Antisense
AGTTTACCTGATTCTGACTCCAAAT 228 63 220 Antisense
GTCTGGTATCCGTTGGTTTCTGGAA 230 471 283 Antisense
GCAAAACTGGTGCCTGTGTGGCGCC 274 319 386 Antisense
GGATTACTGCTTATTTGTCGCCATC 42 509 454 Antisense
GGATGGTCGCCTGGGAAATCTGTCA 224 515 489 Antisense
Sequence Source Affymetrix Proprietary Database