[Home] | [Total List]

[177788_at]

Description T22H6.1 /REP_DB=WormBase Gene ID /WP=CE03696 /TR=Q22687 /GB=CAA90671.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 37.2
(-1.2)
A 		29.2
(-3)
A 		32.5
(-2.3)
A 		56.3
(3)
A 		27
B 48.4
(0.3)
A 		29.2
(-3)
A 		39.8
(-1.2)
A 		64
(3)
A 		35
C 38.1
(-3)
A 		45
(-1.7)
A 		56.2
(0.4)
A 		69.7
(3)
A 		32
avr 41.2
(-1.6) 		34.5
(-3) 		42.8
(-1.3) 		63.3
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 7.5
(-3)
A 		16.4
(-2.3)
A 		79.8
(3)
M 		53.7
(0.8)
A 		35.4
(-0.7)
A 		68.2
(2)
A 		72
B 45.8
(0.2)
A 		56.1
(1.7)
A 		64.3
(3)
A 		34.6
(-1.6)
A 		36.7
(-1.2)
A 		25.3
(-3)
A 		39
C 44.5
(-1.3)
A 		92.1
(3)
A 		49.2
(-0.9)
A 		77
(1.6)
A 		36
(-2.1)
A 		26
(-3)
A 		66
avr 32.6
(-3) 		54.9
(1.2) 		64.4
(3) 		55.1
(1.2) 		36
(-2.4) 		39.8
(-1.6) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.6
(3)
A 		6.3
(-3)
A 		8.5
(-1.2)
A 		8.2
(-1.4)
A 		7
B 15.4
(3)
A 		7.2
(-3)
A 		9.2
(-1.5)
A 		13.6
(1.7)
A 		8
C 12.6
(-2.4)
A 		12.9
(-2.2)
A 		19.6
(3)
A 		11.8
(-3)
A 		8
avr 13.9
(3) 		8.8
(-3) 		12.4
(1.2) 		11.2
(-0.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 1.4
(-3)
A 		5.8
(-1.4)
A 		17.4
(3)
M 		13.6
(1.6)
A 		10.7
(0.5)
A 		16.6
(2.7)
A 		16
B 15.9
(1.2)
A 		18.7
(3)
A 		15.6
(1)
A 		9.2
(-3)
A 		14.9
(0.6)
A 		9.4
(-2.9)
A 		10
C 16.5
(-0.6)
A 		28.1
(3)
A 		12.5
(-1.8)
A 		15.5
(-0.9)
A 		11.6
(-2.1)
A 		8.7
(-3)
A 		19
avr 11.3
(-3) 		17.5
(3) 		15.2
(0.8) 		12.8
(-1.5) 		12.4
(-1.9) 		11.6
(-2.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177788_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17352
Sequence Type Exemplar sequence
Representative Public ID T22H6.1 NCBI
Target Description T22H6.1 /REP_DB=WormBase Gene ID /WP=CE03696 /TR=Q22687 /GB=CAA90671.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077730(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077730 NCBI Caenorhabditis elegans T22H6.1 (T22H6.1) mRNA, complete cds. 11/11 None
SNAP00000019106 ENSEMBL cdna:SNAP chromosome:CEL140:X:12767398:12768730:-1 10/11 None
GENEFINDER00000019120 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12767398:12769712:-1 10/11 None
T22H6.1 ENSEMBL cdna:known chromosome:CEL140:X:12767464:12768960:-1 gene:T22H6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12767463-12768960(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T22H6.1
Entrez Gene 188767 Entrez gene
SwissProt Q22687 EMBL-EBI
WormBase CE03696 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90671 Hypothetical protein T22H6.1 [Caenorhabditis elegans] ref|NP_510131.1| T22H6.1 [Caenorhabditis elegans] 1.0E-120
blast CAE57216 Hypothetical protein CBG00075 [Caenorhabditis briggsae] 1.0E-109
blast CAA90671 Hypothetical protein T22H6.1 [Caenorhabditis elegans] ref|NP_510131.1| T22H6.1 [Caenorhabditis elegans] 1.0E-100
blast CAA90671 Hypothetical protein T22H6.1 [Caenorhabditis elegans] ref|NP_510131.1| T22H6.1 [Caenorhabditis elegans] 2.0E-90
blast CAE57216 Hypothetical protein CBG00075 [Caenorhabditis briggsae] 2.0E-90
blast CAE57216 Hypothetical protein CBG00075 [Caenorhabditis briggsae] 9.0E-86
blast NP_500043 C44B12.6 [Caenorhabditis elegans] gb|AAB88329.1| Hypothetical protein C44B12.6 [Caenorhabditis elegans] 2.0E-20
Sequence
Target Sequence 
>C. ELEGANS:177788_AT
gtggtcggccaaatgtttcttgatcgaaaattgtgccggaacgaatttgtcaagttgttg
gaggatacgaagggaagttgacggagaagaggaagatataatgccatccgaagagtgtta
tcataaatacaatgaagaaaaccatttcaaagtattttcaaattatctgaatcgcaagaa
ctcatcgcattactctccgatcgctccatcatatcagcaagcgctcttaaggttgcaggt
caaggggctaaaacacggagagcaaataacaaagagttccggcaaatgtaacagtaagaa
gctggacacgataagtgcagaaaccccattacgggatcgcgcgttgtgtaaatttgaata
tgtgttgaattacaatccaaagaggttacctgcggcattgacagaagtgaaatgtagttg
ccccaggcccaactcaaaattagtggggaagcggatatttgagtgcgaacatcttcgata
tcaagtgcgagtattaatgtgggatgacagttgtaatacgtttcgggagcacgtcgaaac
aattgcactagcctgcattccagtgattcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGTCGGCCAAATGTTTCTTGATC 479 489 15 Antisense
GCAAGAACTCATCGCATTACTCTCC 285 321 188 Antisense
CGATCGCTCCATCATATCAGCAAGC 75 249 212 Antisense
AAGCGCTCTTAAGGTTGCAGGTCAA 144 149 233 Antisense
GATAAGTGCAGAAACCCCATTACGG 388 423 324 Antisense
CCCATTACGGGATCGCGCGTTGTGT 313 255 339 Antisense
GAGGTTACCTGCGGCATTGACAGAA 513 403 396 Antisense
AAGTGAAATGTAGTTGCCCCAGGCC 330 151 419 Antisense
CCCCAGGCCCAACTCAAAATTAGTG 381 261 435 Antisense
ACGTCGAAACAATTGCACTAGCCTG 406 93 545 Antisense
ACTAGCCTGCATTCCAGTGATTCAG 364 99 561 Antisense
Sequence Source Affymetrix Proprietary Database