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[177787_at]

Description Y7A5A.7 /REP_DB=WormBase Gene ID /WP=CE21332 /TR=Q9XVY7 /GB=CAA22467.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 39.2
(-0.6)
A 		74.5
(2.4)
A 		11.7
(-3)
A 		81.7
(3)
A 		70
B 39.5
(1.7)
A 		14.8
(-3)
A 		30.6
(0)
A 		46.2
(3)
A 		31
C 44.7
(-0.4)
A 		93.5
(3)
A 		6.4
(-3)
A 		85.4
(2.4)
A 		87
avr 41.1
(-0.3) 		60.9
(1.9) 		16.2
(-3) 		71.1
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 21.8
(3)
A 		14.5
(-0.1)
A 		8.6
(-2.7)
A 		10.5
(-1.8)
A 		14.1
(-0.3)
A 		7.8
(-3)
A 		14
B 13.2
(-1.5)
A 		9.9
(-2.2)
A 		6.7
(-2.8)
A 		35.4
(3)
A 		14.2
(-1.3)
A 		5.7
(-3)
A 		30
C 14
(-2.7)
A 		63.8
(3)
A 		11.3
(-3)
A 		53.8
(1.9)
A 		11.8
(-2.9)
A 		19.4
(-2.1)
A 		53
avr 16.3
(-1.2) 		29.4
(2.1) 		8.9
(-3) 		33.2
(3) 		13.4
(-1.9) 		11
(-2.5) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 14.3
(2.1)
A 		16.2
(3)
A 		3.1
(-3)
A 		12
(1.1)
A 		13
B 12.6
(3)
A 		3.7
(-3)
A 		7.1
(-0.7)
A 		9.9
(1.2)
A 		9
C 14.8
(0.1)
A 		26.9
(3)
A 		2.2
(-3)
A 		14.4
(-0)
A 		25
avr 13.9
(2.1) 		15.6
(3) 		4.1
(-3) 		12.1
(1.2) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 4
(0.8)
A 		5.2
(3)
A 		1.9
(-3)
A 		2.7
(-1.5)
A 		4.2
(1.2)
A 		1.9
(-3)
A 		3
B 4.6
(-0.7)
A 		3.3
(-1.7)
A 		1.6
(-3)
A 		9.4
(3)
A 		5.8
(0.2)
A 		2.1
(-2.6)
A 		8
C 5.2
(-2.2)
A 		19.5
(3)
A 		2.9
(-3)
A 		10.8
(-0.1)
A 		3.8
(-2.7)
A 		6.5
(-1.7)
A 		17
avr 4.6
(-0.9) 		9.3
(3) 		2.1
(-3) 		7.6
(1.6) 		4.6
(-0.9) 		3.5
(-1.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177787_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18028
Sequence Type Exemplar sequence
Representative Public ID Y7A5A.7 NCBI
Target Description Y7A5A.7 /REP_DB=WormBase Gene ID /WP=CE21332 /TR=Q9XVY7 /GB=CAA22467.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078199(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078199 NCBI Caenorhabditis elegans Y7A5A.7 (Y7A5A.7) mRNA, complete cds. 11/11 None
GENEFINDER00000028096 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15801228:15804090:-1 11/11 None
Y7A5A.7 ENSEMBL cdna:known chromosome:CEL140:X:15801228:15804090:-1 gene:Y7A5A.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028083 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15801227-15804090(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y7A5A.7
Entrez Gene 189386 Entrez gene
SwissProt Q9XVY7 EMBL-EBI
WormBase CE21332 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22467 Hypothetical protein Y7A5A.7 [Caenorhabditis elegans] ref|NP_510600.1| Y7A5A.7 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177787_AT
tctcgctggtccattcactaacgaactgagacttgaaaatattaatcagttttcaccaga
acccatgcctcaactattcagagaagagccaacaacgtcagagcagtctgcttcaataaa
agattgcatactaaaatcaacaagaagctatcagaaacaagccacaaaagacattgagga
caagaggaccatttttaatgcattgtataaaaaatgtgaagaagatcaagtcgctttcag
gatacaaaatgaaactacagcattattggataatataccaaattttgtcaatggtattcc
gaacgatttctgcttgcaaagcgggattaatactgctaatgcagcaccagccgtgactca
attgcctcaatttcacattccaattccaacaatgaatttgcacaacttatcaaccaatac
tctcccagatctaacaacattcgacccagctttactaaatctacttttagcacaattaac
ggctcagaatattgcaccgcttcctgtggttgctccaaatttggagctggcgcaacaatt
gctctttcagttacctacaccagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCGCTGGTCCATTCACTAACGAA 676 607 567 Antisense
AACCCATGCCTCAACTATTCAGAGA 81 147 626 Antisense
GGTATTCCGAACGATTTCTGCTTGC 373 505 859 Antisense
TACTGCTAATGCAGCACCAGCCGTG 39 647 897 Antisense
CAATTGCCTCAATTTCACATTCCAA 14 181 925 Antisense
ACAACTTATCAACCAATACTCTCCC 354 113 968 Antisense
TACTCTCCCAGATCTAACAACATTC 556 645 984 Antisense
ACATTCGACCCAGCTTTACTAAATC 112 103 1003 Antisense
GCTTCCTGTGGTTGCTCCAAATTTG 108 307 1065 Antisense
AGCTGGCGCAACAATTGCTCTTTCA 659 81 1091 Antisense
TGCTCTTTCAGTTACCTACACCAGC 43 581 1106 Antisense
Sequence Source Affymetrix Proprietary Database