[Home] | [Total List]

[177786_at]

Description F44A6.5 /REP_DB=WormBase Gene ID /WP=CE03326 /TR=Q20387 /GB=CAA90739.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 81      4grp_highest_8_8 > 03      4grp_high_8_8 > 47      6grp_highest_nonorm > 63      6grp_total > 82      4grp_total > 41      6grp_highest_sub > 04_05      6grp_high1_sub > 04      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1293
1 2 3 4 range
A 334.7
(-3)
P 		1276.1
(3)
P 		1241.8
(2.8)
P 		792.2
(-0.1)
P 		941
B 372.1
(-3)
P 		1358.6
(3)
P 		1236.1
(2.3)
P 		912.2
(0.3)
P 		987
C 418
(-3)
P 		1255.7
(1.2)
P 		1628.1
(3)
P 		1080.4
(0.3)
P 		1210
avr 374.9
(-3) 		1296.8
(2.6) 		1368.7
(3) 		928.3
(0.3) 		994

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 667
1 2 3 4 5 6 range
A 368
(-3)
P 		663.8
(0.7)
P 		641.2
(0.4)
P 		846.8
(3)
P 		845.7
(3)
P 		372.9
(-2.9)
P 		479
B 321.2
(-3)
P 		670.4
(0.4)
P 		793.4
(1.6)
P 		832.9
(2)
P 		940.2
(3)
P 		499.2
(-1.3)
P 		619
C 273.3
(-3)
P 		701.8
(1.1)
P 		523.6
(-0.6)
P 		898.2
(3)
P 		700
(1.1)
P 		518.6
(-0.6)
P 		625
avr 320.8
(-3) 		678.7
(1) 		652.7
(0.7) 		859.3
(3) 		828.6
(2.7) 		463.6
(-1.4) 		539
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 452
1 2 3 4 range
A 121.9
(-2.8)
P 		277
(1.6)
P 		324.6
(3)
P 		116
(-3)
P 		209
B 118.6
(-3)
P 		335.5
(3)
P 		286.4
(1.6)
P 		194.4
(-0.9)
P 		217
C 138.4
(-3)
P 		361
(0.1)
P 		567.5
(3)
P 		182.2
(-2.4)
P 		429
avr 126.3
(-3) 		324.5
(1.5) 		392.8
(3) 		164.2
(-2.1) 		267

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 67.8
(-3)
P 		236.1
(2.4)
P 		139.6
(-0.7)
P 		214.8
(1.7)
P 		255.2
(3)
P 		90.8
(-2.3)
P 		187
B 111.8
(-3)
P 		223.2
(-0.5)
P 		192.7
(-1.2)
P 		220.6
(-0.6)
P 		382
(3)
P 		186.2
(-1.3)
P 		270
C 101.3
(-3)
P 		214.1
(2.4)
P 		133.3
(-1.5)
P 		180.6
(0.8)
P 		226.5
(3)
P 		173.6
(0.5)
P 		125
avr 93.6
(-3) 		224.5
(1) 		155.2
(-1.1) 		205.3
(0.4) 		287.9
(3) 		150.2
(-1.3) 		194
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177786_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16778
Sequence Type Exemplar sequence
Representative Public ID F44A6.5 NCBI
Target Description F44A6.5 /REP_DB=WormBase Gene ID /WP=CE03326 /TR=Q20387 /GB=CAA90739.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077316(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077316 NCBI Caenorhabditis elegans F44A6.5 (F44A6.5) mRNA, complete cds. 11/11 None
F44A6.5 ENSEMBL cdna:known chromosome:CEL140:X:10216816:10218652:-1 gene:F44A6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006387 2/11 Cross Hyb Matching Probes None
GENEFINDER00000009279 8/11 Cross Hyb Matching Probes None
SNAP00000009275 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10217419-10218652(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F44A6.5
Entrez Gene 185725 Entrez gene
SwissProt Q20387 EMBL-EBI
WormBase CE03326 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90739 Hypothetical protein F44A6.5 [Caenorhabditis elegans] emb|CAA90725.1| Hypothetical protein F44A6.5 [Caenorhabditis elegans] ref|NP_509717.1| F44A6.5 [Caenorhabditis elegans] 1.0E-142
blast CAE70546 Hypothetical protein CBG17187 [Caenorhabditis briggsae] 4.0E-51
Sequence
Target Sequence 
>C. ELEGANS:177786_AT
gatccgttagaatcgttgttcctgaaatcaattcgccaagtagtcaccaattatgccaaa
gtgaatcaagcacaatgggttttatttctaaaaaataatcaactcgacaatttcttcaac
tgctttttgaacaaatcccctgaactaatgatgtcgcttttggatcattgtgcatgggct
ccttcagaaatagagaaggaagcaaaaataacaataaagactacccagcttttagctgaa
gttgacaataaaacattaatcaatgttgtttttgaaaaaggaatttttgaatttcccatt
tggattccacatattttgcgacgtttctgtaaagatggaatcaacaagattaatattcaa
tttgaaggttcaccaagtgaaaacgatcttcttcaccatctcggacaacaactatttaaa
ttaattcaaaacacaaatttctctgaaagagaaaacatgtcctatcctgctgcctccgct
gaatggaagtacactgttatcaaaggctccgtgtgcttttccgcgcattcaaaacgcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCGTTAGAATCGTTGTTCCTGA 505 415 136 Antisense
AATCAATTCGCCAAGTAGTCACCAA 123 171 161 Antisense
AACTCGACAATTTCTTCAACTGCTT 504 141 236 Antisense
GATGTCGCTTTTGGATCATTGTGCA 285 409 285 Antisense
CATTGTGCATGGGCTCCTTCAGAAA 380 217 301 Antisense
GATTCCACATATTTTGCGACGTTTC 515 433 438 Antisense
TGAAAACGATCTTCTTCACCATCTC 415 573 513 Antisense
GAGAAAACATGTCCTATCCTGCTGC 217 393 584 Antisense
TGCTGCCTCCGCTGAATGGAAGTAC 68 581 603 Antisense
TATCAAAGGCTCCGTGTGCTTTTCC 120 655 633 Antisense
CTTTTCCGCGCATTCAAAACGCAAA 343 221 651 Antisense
Sequence Source Affymetrix Proprietary Database