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[177784_at]

Description F07C6.3 /REP_DB=WormBase Gene ID /WP=CE05564 /TR=Q19158 /GB=CAA93484.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 30      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 33      6grp_total > 31      4grp_total > 53      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2147
1 2 3 4 range
A 2636.7
(3)
P 		2076.7
(1.4)
P 		1683.2
(0.3)
P 		515.9
(-3)
P 		2121
B 2415.3
(2.9)
P 		2436.1
(3)
P 		1776.6
(0.9)
P 		577.5
(-3)
P 		1859
C 2615.3
(3)
P 		2232.2
(1.9)
P 		1828
(0.8)
P 		489.5
(-3)
P 		2126
avr 2555.8
(3) 		2248.3
(2.1) 		1762.6
(0.7) 		527.6
(-3) 		2028

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2015
1 2 3 4 5 6 range
A 1642.5
(0.1)
P 		1872.4
(1.1)
P 		2356.6
(3)
P 		1539.7
(-0.3)
P 		855.1
(-3)
P 		1009.4
(-2.4)
P 		1502
B 1667.3
(-0.6)
P 		2112.2
(0.7)
P 		2869.8
(3)
P 		1668.6
(-0.6)
P 		890.3
(-3)
P 		1108.3
(-2.3)
P 		1980
C 1429.5
(-0.3)
P 		2039.7
(3)
P 		1940.2
(2.5)
P 		1653.3
(0.9)
P 		942.7
(-3)
P 		1262.2
(-1.3)
P 		1097
avr 1579.8
(-0.3) 		2008.1
(1.5) 		2388.9
(3) 		1620.5
(-0.1) 		896
(-3) 		1126.6
(-2.1) 		1493
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 885
1 2 3 4 range
A 960
(3)
P 		450.8
(-0.5)
P 		440
(-0.5)
P 		75.5
(-3)
P 		885
B 770.2
(3)
P 		601.7
(1.4)
P 		411.7
(-0.3)
P 		123.1
(-3)
P 		647
C 865.8
(3)
P 		641.8
(1.3)
P 		637.1
(1.2)
P 		82.5
(-3)
P 		783
avr 865.3
(3) 		564.8
(0.7) 		496.3
(0.1) 		93.7
(-3) 		772

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 457
1 2 3 4 5 6 range
A 302.8
(-2.2)
P 		665.9
(3)
P 		513.2
(0.8)
P 		390.5
(-0.9)
P 		258
(-2.8)
P 		245.7
(-3)
P 		420
B 580.1
(0.8)
P 		703.1
(3)
P 		696.9
(2.9)
P 		442
(-1.6)
P 		361.7
(-3)
P 		413.3
(-2.1)
P 		341
C 529.9
(1.3)
P 		622.4
(3)
P 		493.8
(0.6)
P 		332.5
(-2.5)
P 		305.1
(-3)
P 		422.5
(-0.8)
P 		317
avr 470.9
(-0.3) 		663.8
(3) 		568
(1.4) 		388.3
(-1.6) 		308.3
(-3) 		360.5
(-2.1) 		356
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177784_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9249
Sequence Type Exemplar sequence
Representative Public ID F07C6.3 NCBI
Target Description F07C6.3 /REP_DB=WormBase Gene ID /WP=CE05564 /TR=Q19158 /GB=CAA93484.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070037(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070037 NCBI Caenorhabditis elegans F07C6.3 (F07C6.3) mRNA, complete cds. 11/11 None
GENEFINDER00000006501 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12789220:12790765:1 11/11 None
F07C6.3 ENSEMBL cdna:known chromosome:CEL140:IV:12789028:12790364:1 gene:F07C6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006493 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12789033-12790370(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07C6.3
Entrez Gene 184138 Entrez gene
SwissProt Q19158 EMBL-EBI
WormBase CE05564 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93484 Hypothetical protein F07C6.3 [Caenorhabditis elegans] ref|NP_502438.1| F07C6.3 [Caenorhabditis elegans] 1.0E-123
blast CAA93484 Hypothetical protein F07C6.3 [Caenorhabditis elegans] ref|NP_502438.1| F07C6.3 [Caenorhabditis elegans] 1.0E-110
blast CAE74553 Hypothetical protein CBG22311 [Caenorhabditis briggsae] 6.0E-79
blast CAE74553 Hypothetical protein CBG22311 [Caenorhabditis briggsae] 4.0E-78
blast CAB62780 Hypothetical protein C08F11.1 [Caenorhabditis elegans] ref|NP_502629.1| C08F11.1 [Caenorhabditis elegans] 4.0E-74
blast CAB62780 Hypothetical protein C08F11.1 [Caenorhabditis elegans] ref|NP_502629.1| C08F11.1 [Caenorhabditis elegans] 2.0E-73
Sequence
Target Sequence 
>C. ELEGANS:177784_AT
agtcctcttttttcatctgtattttttgtgttttgcgtagtgcaatatgtggataaccag
caagtttttggatcaatcgctttctcggcaatccaaaaaatcgttccacatgcttcggac
gtcaatgcttttgctctagcacaagggcttaactcaattgttggacagtattctgcacag
aggacacttgtcaataaattcttttcccagaataaggcgggatctccaaatccaaaaact
ctttcgttatacgataactcgacttacagcaagcagaagttgatcgcgttggttaacaat
cgacaagccgttactcaatggtggtcggacctgacgccaggaatcacaaagatctacgga
gctgctcaggctaccaaatataagaatctctacgcgtactttgacagtcggtacatcaac
agcttctcatacacgatggcttattggatgatgtgtgttcttttacaaaacgcttttgga
gatgaagcagactacaatgctacatctgacttgatgttcgactcattagagaaacaacta
aacaagtcaactgcaattgccttcgagatctacacaactgcattcgaggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTCCTCTTTTTTCATCTGTATTTT 377 61 82 Antisense
ATCGCTTTCTCGGCAATCCAAAAAA 272 37 157 Antisense
ATGCTTCGGACGTCAATGCTTTTGC 387 29 191 Antisense
ACAAGCCGTTACTCAATGGTGGTCG 455 111 384 Antisense
GTCGGACCTGACGCCAGGAATCACA 361 471 405 Antisense
GATCTACGGAGCTGCTCAGGCTACC 423 419 432 Antisense
GAATCTCTACGCGTACTTTGACAGT 287 329 465 Antisense
GACAGTCGGTACATCAACAGCTTCT 509 367 484 Antisense
AACAGCTTCTCATACACGATGGCTT 677 135 499 Antisense
AACTGCAATTGCCTTCGAGATCTAC 441 141 630 Antisense
GATCTACACAACTGCATTCGAGGCC 673 419 648 Antisense
Sequence Source Affymetrix Proprietary Database