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[177783_at]

Description ZK6.11 /REP_DB=WormBase Gene ID /WP=CE18448 /TR=O61875 /GB=AAG45577.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 41      6grp_highest_nonorm > 43      6grp_total > 51      4grp_total > 56      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4433
1 2 3 4 range
A 630.9
(-2.2)
P 		2750.2
(0.7)
P 		4474.2
(3)
P 		41.4
(-3)
A 		4433
B 721.7
(-2.1)
P 		2304.8
(0.1)
P 		4432.4
(3)
P 		40.9
(-3)
A 		4392
C 700.6
(-2.1)
P 		2202.4
(-0)
P 		4387.5
(3)
P 		55.9
(-3)
A 		4332
avr 684.4
(-2.1) 		2419.1
(0.2) 		4431.4
(3) 		46.1
(-3) 		4385

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1782
1 2 3 4 5 6 range
A 916.1
(-0.5)
P 		1055.3
(0)
P 		1842.4
(3)
P 		1113.4
(0.3)
P 		516.7
(-2)
P 		250.4
(-3)
P 		1592
B 762.5
(-1.3)
P 		1182.5
(0.1)
P 		2032.8
(3)
P 		1339.8
(0.6)
P 		543.1
(-2.1)
P 		265.4
(-3)
P 		1767
C 688.7
(-1.2)
P 		1275.6
(1.5)
P 		1610.1
(3)
P 		1606.1
(3)
P 		478.4
(-2.2)
P 		292.9
(-3)
P 		1317
avr 789.1
(-1) 		1171.1
(0.5) 		1828.4
(3) 		1353.1
(1.2) 		512.7
(-2.1) 		269.6
(-3) 		1559
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1523
1 2 3 4 range
A 229.7
(-1.8)
P 		597
(0)
P 		1169.6
(3)
P 		6.1
(-3)
A 		1164
B 230.1
(-1.7)
P 		569.2
(0.3)
P 		1027.1
(3)
P 		8.7
(-3)
A 		1018
C 231.9
(-2.1)
P 		633.2
(-0.5)
P 		1529.2
(3)
P 		9.4
(-3)
A 		1520
avr 230.6
(-1.9) 		599.8
(-0.1) 		1242
(3) 		8.1
(-3) 		1234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 433
1 2 3 4 5 6 range
A 168.9
(-1.1)
P 		375.3
(2.5)
P 		401.2
(3)
P 		282.4
(0.9)
P 		155.9
(-1.3)
P 		61
(-3)
P 		340
B 265.3
(-0.5)
P 		393.6
(1.5)
P 		493.6
(3)
P 		354.9
(0.9)
P 		220.7
(-1.1)
P 		99
(-3)
P 		395
C 255.3
(0)
P 		389.2
(2.6)
P 		409.8
(3)
P 		323
(1.3)
P 		154.8
(-1.9)
P 		98.1
(-3)
P 		312
avr 229.8
(-0.5) 		386
(2.2) 		434.9
(3) 		320.1
(1) 		177.1
(-1.4) 		86
(-3) 		349
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177783_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15573
Sequence Type Exemplar sequence
Representative Public ID ZK6.11 NCBI
Target Description ZK6.11 /REP_DB=WormBase Gene ID /WP=CE18448 /TR=O61875 /GB=AAG45577.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029143(11), NM_001029144(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029143 NCBI Caenorhabditis elegans ZK6.11a (ZK6.11) mRNA, complete cds. 11/11 None
NM_001029144 NCBI Caenorhabditis elegans ZK6.11b (ZK6.11) mRNA, complete cds. 10/11 None
SNAP00000041444 ENSEMBL cdna:SNAP chromosome:CEL140:V:415742:417495:-1 11/11 None
GENEFINDER00000041446 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:415335:417449:-1 11/11 None
ZK6.11a ENSEMBL cdna:known chromosome:CEL140:V:415542:417535:-1 gene:ZK6.11 11/11 None
ZK6.11b ENSEMBL cdna:known chromosome:CEL140:V:415725:417495:-1 gene:ZK6.11 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:415519-417495(-) 99.52 100.0
Public Domain and Genome References
Ensembl ZK6.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG45577 Hypothetical protein ZK6.11a [Caenorhabditis elegans] ref|NP_001024314.1| ZK6.11a [Caenorhabditis elegans] 0.0
blast AAT68887 Hypothetical protein ZK6.11b [Caenorhabditis elegans] ref|NP_001024315.1| ZK6.11b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000041446 1 355-374
Sequence
Target Sequence 
>C. ELEGANS:177783_AT
aaagttctcgttgaccttggtagcattctatctgaaaacttatagaggtgtcaattttag
aatcgaaccaggatattctagcatcgattcaagcaccacaacagacgttaccacaactgg
tttttatatgaagcccctggagaaagacgatagcaccattactgtgaatatcaagagaga
cactagattttctggagcttctggcgctaatgtcatcgggaatctcacgactggaggaat
ggtcactgtaggcttctatgaaggagcgtcaaagtatgaagattcggcagcaccaaatcc
attttgctctccatggagcattccatacattttgcagaacatgaagatttggtctacgtc
ttcaaacccaaagaatggacagtacttcgtgcagtactttattgcccaaggtgcaattgg
tagtggtacaacttcgagaccggggcagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTTCTCGTTGACCTTGGTAGCA 79 121 654 Antisense
ATTCTAGCATCGATTCAAGCACCAC 187 11 728 Antisense
CAAGCACCACAACAGACGTTACCAC 328 181 743 Antisense
AACTGGTTTTTATATGAAGCCCCTG 593 141 768 Antisense
GAGCTTCTGGCGCTAATGTCATCGG 412 387 848 Antisense
GTCATCGGGAATCTCACGACTGGAG 366 467 865 Antisense
GAGGAATGGTCACTGTAGGCTTCTA 257 405 887 Antisense
AGATTCGGCAGCACCAAATCCATTT 691 63 933 Antisense
TGGTCTACGTCTTCAAACCCAAAGA 182 397 1003 Antisense
ACTTCGTGCAGTACTTTATTGCCCA 44 105 1037 Antisense
GTACAACTTCGAGACCGGGGCAGAC 324 459 1079 Antisense
Sequence Source Affymetrix Proprietary Database