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[177782_s_at]

Description T18D3.1 /REP_DB=WormBase Gene ID /WP=CE03662 /TR=Q22540 /GB=CAA92191.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 65      4grp_high_8_8 > 38      6grp_total > 56      4grp_total > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 93
(-3)
P 		123.9
(-1.1)
P 		175
(2.1)
P 		190.2
(3)
P 		97
B 137.7
(-3)
P 		172.8
(3)
P 		156.7
(0.2)
P 		151.5
(-0.6)
P 		35
C 116.5
(-1.4)
A 		249
(3)
P 		173.6
(0.5)
P 		69.8
(-3)
A 		179
avr 115.7
(-3) 		181.9
(3) 		168.4
(1.8) 		137.2
(-1.1) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 68.1
(-3)
P 		108.5
(-1.2)
P 		83
(-2.3)
A 		101.5
(-1.5)
P 		77.1
(-2.6)
P 		201.6
(3)
P 		134
B 110.2
(0.1)
P 		105.8
(-0.3)
P 		142.3
(3)
P 		76
(-3)
P 		102
(-0.6)
P 		118
(0.8)
P 		66
C 163.3
(3)
P 		72.9
(-3)
P 		160.4
(2.8)
P 		113
(-0.3)
P 		110.3
(-0.5)
P 		125.7
(0.5)
P 		90
avr 113.9
(-0.9) 		95.7
(-3) 		128.6
(0.7) 		96.8
(-2.9) 		96.5
(-2.9) 		148.4
(3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 33.8
(-0.8)
P 		26.9
(-3)
P 		45.7
(3)
P 		27.8
(-2.7)
P 		19
B 43.9
(3)
P 		42.7
(2.4)
P 		36.3
(-0.9)
P 		32.3
(-3)
P 		12
C 38.6
(-0.3)
A 		71.6
(3)
P 		60.5
(1.9)
P 		11.8
(-3)
A 		60
avr 38.8
(0.8) 		47.1
(2.9) 		47.5
(3) 		24
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 12.6
(-3)
P 		38.6
(1.3)
P 		18.1
(-2.1)
A 		25.7
(-0.8)
P 		23.3
(-1.2)
P 		49.1
(3)
P 		37
B 38.3
(1.6)
P 		35.2
(0.8)
P 		34.6
(0.6)
P 		20.1
(-3)
P 		41.4
(2.3)
P 		44
(3)
P 		24
C 60.5
(3)
P 		22.2
(-3)
P 		40.8
(-0.1)
P 		22.7
(-2.9)
P 		35.7
(-0.9)
P 		42.1
(0.1)
P 		38
avr 37.1
(0.8) 		32
(-0.5) 		31.2
(-0.7) 		22.8
(-3) 		33.5
(-0.1) 		45.1
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177782_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16370
Sequence Type Exemplar sequence
Representative Public ID T18D3.1 NCBI
Target Description T18D3.1 /REP_DB=WormBase Gene ID /WP=CE03662 /TR=Q22540 /GB=CAA92191.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077687(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077687 NCBI Caenorhabditis elegans T18D3.1 (T18D3.1) mRNA, complete cds. 11/11 None
SNAP00000005386 ENSEMBL cdna:SNAP chromosome:CEL140:X:12454686:12457558:1 11/11 None
GENEFINDER00000005398 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12454686:12457558:1 11/11 None
T18D3.1 ENSEMBL cdna:known chromosome:CEL140:X:12454666:12457865:1 gene:T18D3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12454685-12457558(+) 89.19 100.0
Public Domain and Genome References
Gene Title
Ensembl T18D3.1
Entrez Gene 181402 Entrez gene
SwissProt Q22540 EMBL-EBI
WormBase CE03662 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92191 Hypothetical protein T18D3.1 [Caenorhabditis elegans] ref|NP_510088.1| T18D3.1 [Caenorhabditis elegans] 0.0
blast CAE57246 Hypothetical protein CBG00124 [Caenorhabditis briggsae] 1.0E-159
blast CAE74598 Hypothetical protein CBG22379 [Caenorhabditis briggsae] 1.0E-138
Sequence
Target Sequence 
>C. ELEGANS:177782_S_AT
agtgcatggccgcaaccaaggatcttctgctcaccggcggagaagatggaaaagttattg
tgcagattgccaattttaaaaaccccaagtttggcgatgacaacattaaccaccaccgtc
tgacactgaaccgtggcaatttggcagaacttaaagacaaaggtctcgagaaagacgatg
aagctatctccgaatctgatgattccgagtcggatgatggatcaaagccaagtacatctg
catctgcatcagtgtcttcttcttcgaaacataagaaggacaaacacgacattccatcaa
cttcatcggcagcttctacttcgtcatcttcttcatccaaacatgaaacaaaagaggagc
gcaaagcacgaaaggaaaaggaacgtgaacgagcggaaaagaaggctaagaaggagaaag
atggtcatcgggaggaggaaaagcccaagaagaaggataaaaagcacgaaactgaggagg
aacgcgcggaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGCATGGCCGCAACCAAGGATCT 679 57 962 Antisense
ATCTTCTGCTCACCGGCGGAGAAGA 418 31 983 Antisense
GATGACAACATTAACCACCACCGTC 9 411 1057 Antisense
ACCACCGTCTGACACTGAACCGTGG 237 37 1073 Antisense
GAACCGTGGCAATTTGGCAGAACTT 196 347 1089 Antisense
GACGATGAAGCTATCTCCGAATCTG 299 379 1135 Antisense
GAATCTGATGATTCCGAGTCGGATG 385 329 1153 Antisense
AAGCCAAGTACATCTGCATCTGCAT 102 149 1186 Antisense
TGCATCTGCATCAGTGTCTTCTTCT 353 579 1200 Antisense
AAACACGACATTCCATCAACTTCAT 478 129 1243 Antisense
AAACTGAGGAGGAACGCGCGGAACG 153 127 1430 Antisense
Sequence Source Affymetrix Proprietary Database