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[177781_at]

Description W05B5.1 /REP_DB=WormBase Gene ID /WP=CE19005 /TR=Q9XUK9 /GB=CAB04917.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 05      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_highest_nonorm > 41      6grp_total > 06      4grp_total > 52      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 606
1 2 3 4 range
A 909.2
(2.2)
P 		947.5
(2.7)
P 		965.8
(3)
P 		552.3
(-3)
P 		414
B 982.1
(3)
P 		986.1
(3)
P 		684
(-0.5)
P 		467.2
(-3)
P 		519
C 913.5
(1.5)
P 		1064.2
(3)
P 		849.9
(0.9)
P 		458.1
(-3)
P 		606
avr 934.9
(2.2) 		999.3
(3) 		833.2
(1) 		492.5
(-3) 		507

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 869
1 2 3 4 5 6 range
A 1063.5
(3)
P 		864
(0.5)
P 		636.3
(-2.4)
P 		585.9
(-3)
P 		604
(-2.8)
P 		598.4
(-2.8)
P 		478
B 880.4
(3)
P 		752.3
(1.3)
P 		557.6
(-1.2)
P 		617.3
(-0.4)
P 		634.5
(-0.2)
P 		415.3
(-3)
P 		465
C 1284.1
(3)
P 		739.7
(-1.2)
P 		787.9
(-0.8)
P 		508.3
(-2.9)
P 		843.5
(-0.4)
P 		497.8
(-3)
P 		786
avr 1076
(3) 		785.3
(-0) 		660.6
(-1.4) 		570.5
(-2.3) 		694
(-1) 		503.8
(-3) 		572
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 331
(3)
P 		205.7
(-0)
P 		252.5
(1.1)
P 		80.9
(-3)
P 		250
B 313.2
(3)
P 		243.5
(1)
P 		158.5
(-1.3)
P 		99.6
(-3)
P 		214
C 302.4
(2.9)
P 		305.9
(3)
P 		296.2
(2.7)
P 		77.3
(-3)
P 		229
avr 315.5
(3) 		251.7
(1.3) 		235.7
(0.9) 		85.9
(-3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 374
1 2 3 4 5 6 range
A 196
(-1)
P 		307.3
(3)
P 		138.6
(-3)
P 		148.6
(-2.6)
P 		182.3
(-1.4)
P 		145.7
(-2.7)
P 		169
B 306.3
(3)
P 		250.4
(1)
P 		135.4
(-3)
P 		163.5
(-2)
P 		257.8
(1.3)
P 		154.8
(-2.3)
P 		171
C 476
(3)
P 		225.7
(-1)
P 		200.5
(-1.4)
P 		102.2
(-3)
P 		272.9
(-0.3)
P 		166.6
(-2)
P 		374
avr 326.1
(3) 		261.1
(0.9) 		158.2
(-2.4) 		138.1
(-3) 		237.7
(0.2) 		155.7
(-2.4) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177781_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.893
Sequence Type Exemplar sequence
Representative Public ID W05B5.1 NCBI
Target Description W05B5.1 /REP_DB=WormBase Gene ID /WP=CE19005 /TR=Q9XUK9 /GB=CAB04917.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060881(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060881 NCBI Caenorhabditis elegans W05B5.1 (W05B5.1) mRNA, complete cds. 11/11 None
W05B5.1 ENSEMBL cdna:known chromosome:CEL140:I:13050813:13053586:1 gene:W05B5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000033658 3/11 Cross Hyb Matching Probes None
GENEFINDER00000033660 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13050743-13053168(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W05B5.1
Entrez Gene 173177 Entrez gene
SwissProt Q9XUK9 EMBL-EBI
WormBase CE19005 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04917 Hypothetical protein W05B5.1 [Caenorhabditis elegans] ref|NP_493282.1| W05B5.1 [Caenorhabditis elegans] 1.0E-112
blast CAE60696 Hypothetical protein CBG04358 [Caenorhabditis briggsae] 2.0E-80
Sequence
Target Sequence 
>C. ELEGANS:177781_AT
gacactgtggaattaggctccgcctacttcctgggggaaaattttgaaatggctgtattt
cagccagttttcgaggaagtttgctggttttttataccagacgctccagtgagccgagta
gtcgtcacatcggataccgtaatacctgaagctccgtcaccgatcccgccgccggcacaa
tttgaggaagttcggagagtcgcggtgtcaccaccattaccttctaaaaaaatgaccgac
gctgaaaatccgttccgacctgaggagatactgtatcacgaggttgacccaattgtcgaa
caatacctgcacaaaccatttccgccgagcaggccaggctccgcacagaatacacccaca
aaacagcagcatttcacacaggcagccacaccaccaccaacaaatcacgaatcaccatta
tatcttcaaaatgggttaagcaaagagcaattggtgcagaatgagaaaaatgagcacgga
aatcattcggagccacttctagctgaacacaatagaaatgaggaatatgtcgaggatctt
cccccagctggcaaagtcgaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACTGTGGAATTAGGCTCCGCCT 545 367 34 Antisense
TACCAGACGCTCCAGTGAGCCGAGT 544 647 128 Antisense
GTAGTCGTCACATCGGATACCGTAA 675 453 151 Antisense
ATACCGTAATACCTGAAGCTCCGTC 84 23 167 Antisense
GAAGTTCGGAGAGTCGCGGTGTCAC 543 337 220 Antisense
TGACCGACGCTGAAAATCCGTTCCG 653 563 266 Antisense
ATCCGTTCCGACCTGAGGAGATACT 282 37 281 Antisense
AACAATACCTGCACAAACCATTTCC 667 133 332 Antisense
ACAGCAGCATTTCACACAGGCAGCC 431 109 396 Antisense
GAAATCATTCGGAGCCACTTCTAGC 357 363 512 Antisense
TTCCCCCAGCTGGCAAAGTCGAATT 207 697 572 Antisense
Sequence Source Affymetrix Proprietary Database