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[177780_at]

Description C53C7.3 /REP_DB=WormBase Gene ID /WP=CE19769 /TR=Q9XXU2 /GB=CAA15515.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 41.2
(-0.8)
A 		75.4
(3)
A 		21.6
(-3)
A 		26.2
(-2.5)
A 		54
B 51.9
(-0.7)
P 		77.6
(2.4)
A 		82.7
(3)
A 		32.1
(-3)
A 		51
C 65.5
(0)
A 		67.5
(0.2)
A 		18.7
(-3)
A 		111.3
(3)
P 		93
avr 52.9
(-0.8) 		73.5
(3) 		41
(-3) 		56.5
(-0.1) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 40.2
(-0.1)
A 		52
(1.4)
A 		22.4
(-2.3)
A 		65
(3)
A 		44.6
(0.5)
A 		16.8
(-3)
A 		48
B 44
(0.1)
A 		37.1
(-0.6)
A 		19.4
(-2.4)
A 		13
(-3)
A 		73.4
(3)
P 		44.5
(0.1)
A 		60
C 37.4
(0.2)
A 		24.4
(-1.5)
A 		12.7
(-3)
A 		16.4
(-2.5)
A 		58.7
(3)
A 		31.9
(-0.5)
A 		46
avr 40.5
(0.3) 		37.8
(-0.1) 		18.2
(-3) 		31.5
(-1) 		58.9
(3) 		31.1
(-1.1) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 15
(2.3)
A 		16.4
(3)
A 		5.6
(-2.1)
A 		3.8
(-3)
A 		13
B 16.6
(1.7)
P 		19.2
(3)
A 		19.2
(3)
A 		6.9
(-3)
A 		12
C 21.7
(3)
A 		19.4
(2.1)
A 		6.5
(-3)
A 		18.8
(1.9)
P 		15
avr 17.8
(2.6) 		18.3
(3) 		10.4
(-2.6) 		9.8
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 7.4
(-1.6)
A 		18.5
(3)
A 		4.9
(-2.7)
A 		16.5
(2.2)
A 		13.5
(0.9)
A 		4.1
(-3)
A 		14
B 15.3
(-0.3)
A 		12.4
(-1)
A 		4.7
(-2.7)
A 		3.4
(-3)
A 		29.8
(3)
P 		16.6
(0)
A 		26
C 13.8
(1)
A 		7.4
(-1.4)
A 		3.2
(-3)
A 		3.3
(-3)
A 		19
(3)
A 		10.7
(-0.2)
A 		16
avr 12.2
(-0.1) 		12.8
(0.1) 		4.3
(-3) 		7.7
(-1.8) 		20.8
(3) 		10.5
(-0.7) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177780_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17684
Sequence Type Exemplar sequence
Representative Public ID C53C7.3 NCBI
Target Description C53C7.3 /REP_DB=WormBase Gene ID /WP=CE19769 /TR=Q9XXU2 /GB=CAA15515.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077764(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077764 NCBI Caenorhabditis elegans C53C7.3 (C53C7.3) mRNA, complete cds. 11/11 None
GENEFINDER00000019817 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13048478:13050805:1 11/11 None
C53C7.3 ENSEMBL cdna:known chromosome:CEL140:X:13048478:13050805:1 gene:C53C7.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019815 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13048477-13050805(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C53C7.3
Entrez Gene 183748 Entrez gene
SwissProt Q9XXU2 EMBL-EBI
WormBase CE34167 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA15515 Hypothetical protein C53C7.3 [Caenorhabditis elegans] ref|NP_510165.2| C53C7.3 [Caenorhabditis elegans] 1.0E-100
blast CAA15515 Hypothetical protein C53C7.3 [Caenorhabditis elegans] ref|NP_510165.2| C53C7.3 [Caenorhabditis elegans] 1.0E-98
Sequence
Target Sequence 
>C. ELEGANS:177780_AT
ggatgtccagcaagaacctgcaccaccactggaacgcccaattctcaatgaaattatccg
accagtgccgattcgtccaaacaacaacagctcatatcgccagtatgtaccaactccacc
gccatcactgtctcatatgatgcgatcgccaccaatcaatgatgagccattgccacatcc
cattgctctgtcacaccaacatggtaatattcaatttcaacgagaagatctcgagctcaa
tgatcaatatgctagaaaccgactgttagaccagctggttcaattactcttgcgaccgcc
agaggttcaacacgttatccaccagcacgtatttcttcaacctccaccaccaccgccacc
agcattttttgatcatcactacccacacttcccaccatatgagctaaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGTCCAGCAAGAACCTGCACCA 64 515 207 Antisense
CACTGGAACGCCCAATTCTCAATGA 206 199 233 Antisense
ATATCGCCAGTATGTACCAACTCCA 416 21 300 Antisense
TGTCTCATATGATGCGATCGCCACC 60 559 335 Antisense
AATGATGAGCCATTGCCACATCCCA 180 161 364 Antisense
CCATTGCTCTGTCACACCAACATGG 21 271 386 Antisense
GCTGGTTCAATTACTCTTGCGACCG 673 293 480 Antisense
TCTTGCGACCGCCAGAGGTTCAACA 126 617 494 Antisense
GAGGTTCAACACGTTATCCACCAGC 6 403 508 Antisense
GCCACCAGCATTTTTTGATCATCAC 472 279 561 Antisense
ACACTTCCCACCATATGAGCTAAAC 186 111 591 Antisense
Sequence Source Affymetrix Proprietary Database