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[177778_at]

Description F15D3.7 /REP_DB=WormBase Gene ID /WP=CE15854 /TR=Q9XVQ2 /GB=CAB02956.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 46      6grp_total > 09      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11395
1 2 3 4 range
A 3030.5
(-2.8)
P 		2605.5
(-3)
P 		2582.2
(-3)
P 		13834.6
(3)
P 		11252
B 3006.3
(-2.7)
P 		2614
(-2.9)
P 		2439.3
(-3)
P 		13564.1
(3)
P 		11125
C 2984.9
(-2.8)
P 		3079.1
(-2.7)
P 		2577.4
(-3)
P 		13247.3
(3)
P 		10670
avr 3007.2
(-2.7) 		2766.2
(-2.9) 		2533
(-3) 		13548.7
(3) 		11016

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1115
1 2 3 4 5 6 range
A 3191.9
(3)
P 		2285.9
(-3)
P 		2777.4
(0.3)
P 		2817.4
(0.5)
P 		2621
(-0.8)
P 		2413.4
(-2.2)
P 		906
B 3284.2
(2.9)
P 		2910
(-1)
P 		3133.1
(1.3)
P 		3294.6
(3)
P 		3034.8
(0.3)
P 		2716.3
(-3)
P 		578
C 2910.7
(0.3)
P 		2775.2
(-0.5)
P 		2343.4
(-2.9)
P 		3400.8
(3)
P 		2323
(-3)
P 		2883.6
(0.1)
P 		1078
avr 3128.9
(2.5) 		2657
(-3) 		2751.3
(-1.9) 		3170.9
(3) 		2659.6
(-3) 		2671.1
(-2.8) 		514
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2325
1 2 3 4 range
A 1103.4
(-0.8)
P 		565.6
(-3)
P 		675
(-2.6)
P 		2025.1
(3)
P 		1460
B 958.7
(-2)
P 		645.6
(-2.8)
P 		565.2
(-3)
P 		2890.5
(3)
P 		2325
C 988.1
(-2.5)
P 		885.3
(-3)
P 		898.3
(-2.9)
P 		2233.7
(3)
P 		1348
avr 1016.7
(-1.9) 		698.8
(-3) 		712.8
(-3) 		2383.1
(3) 		1684

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 645
1 2 3 4 5 6 range
A 588.4
(-3)
P 		813
(3)
P 		604.9
(-2.5)
P 		714.6
(0.4)
P 		790.9
(2.4)
P 		587.6
(-3)
P 		225
B 1142.7
(1.9)
P 		968.6
(-0.4)
P 		760.8
(-3)
P 		872.6
(-1.6)
P 		1233
(3)
P 		1012.9
(0.2)
P 		472
C 1078.9
(3)
P 		846.8
(0.1)
P 		596.4
(-3)
P 		683.9
(-1.9)
P 		751.7
(-1.1)
P 		965.3
(1.6)
P 		483
avr 936.7
(3) 		876.1
(1.7) 		654
(-3) 		757
(-0.8) 		925.2
(2.8) 		855.3
(1.3) 		283
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177778_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.894
Sequence Type Exemplar sequence
Representative Public ID F15D3.7 NCBI
Target Description F15D3.7 /REP_DB=WormBase Gene ID /WP=CE15854 /TR=Q9XVQ2 /GB=CAB02956.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060552(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060552 NCBI Caenorhabditis elegans F15D3.7 (F15D3.7) mRNA, complete cds. 11/11 A 
SNAP00000000122 ENSEMBL cdna:SNAP chromosome:CEL140:I:11574265:11587602:1 11/11 None
GENEFINDER00000000125 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11586767:11587602:1 11/11 None
F15D3.7 ENSEMBL cdna:known chromosome:CEL140:I:11586762:11587716:1 gene:F15D3.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11586697-11587533(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15D3.7
Entrez Gene 173041 Entrez gene
SwissProt Q9XVQ2 EMBL-EBI
WormBase CE15854 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5744 mitochondrial inner membrane presequence translocase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15450 protein translocase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02959 Hypothetical protein F15D3.4 [Caenorhabditis elegans] ref|NP_492950.1| F15D3.4 [Caenorhabditis elegans] 0.0
blast CAB02956 Hypothetical protein F15D3.7 [Caenorhabditis elegans] ref|NP_492953.1| F15D3.7 [Caenorhabditis elegans] 1.0E-127
blast CAB02956 Hypothetical protein F15D3.7 [Caenorhabditis elegans] ref|NP_492953.1| F15D3.7 [Caenorhabditis elegans] 1.0E-126
blast CAE69300 Hypothetical protein CBG15355 [Caenorhabditis briggsae] 1.0E-118
blast CAE69300 Hypothetical protein CBG15355 [Caenorhabditis briggsae] 1.0E-117
blast XP_625105 PREDICTED: similar to ENSANGP00000012211 [Apis mellifera] 7.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR003397 EMBL-EBI Mitochondrial import inner membrane translocase, subunit Tim17/22 1.8E-37
Pfam IPR003397 EMBL-EBI Mitochondrial import inner membrane translocase, subunit Tim17/22 1.8E-37
Sequence
Target Sequence 
>C. ELEGANS:177778_AT
agaaccatcagtgccggatcattctccattcccggcggcacccgtcctcgccttggatca
actgaaatctgctggagtaggagtttcccggcaaatgacaccctatgtgcagatggatcc
ctcaatgtttgcttctcagcagccgcaatacattatgccggaaggaggtgttgctggaaa
gggaaaattcgaattcgcgctaggacatatcggatgggccgtcggcggagcattcggtgt
tggatgtgctcgcggagctctcggtgagcttatgaacccggaaacccgtaaaatggtcgg
aaaaccatggatgacacgtatggtgaacgcaacgatgaagcatggctcaggatttgctca
accgtctggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACCATCAGTGCCGGATCATTCT 612 73 141 Antisense
GTCCTCGCCTTGGATCAACTGAAAT 318 477 184 Antisense
GTAGGAGTTTCCCGGCAAATGACAC 645 455 217 Antisense
ACACCCTATGTGCAGATGGATCCCT 603 109 238 Antisense
AGATGGATCCCTCAATGTTTGCTTC 332 67 251 Antisense
TGCTTCTCAGCAGCCGCAATACATT 637 579 270 Antisense
GAATTCGCGCTAGGACATATCGGAT 590 323 331 Antisense
ATATCGGATGGGCCGTCGGCGGAGC 406 17 347 Antisense
TCGGCGGAGCATTCGGTGTTGGATG 553 607 362 Antisense
GTGAGCTTATGAACCCGGAAACCCG 187 463 404 Antisense
TCAGGATTTGCTCAACCGTCTGGAG 422 611 487 Antisense
Sequence Source Affymetrix Proprietary Database