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[177777_at]

Description C04G2.9 /REP_DB=WormBase Gene ID /WP=CE05217 /TR=Q17633 /GB=CAA94678.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 42      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 69.5
(-3)
A 		142.3
(3)
M 		88.6
(-1.4)
A 		77.4
(-2.3)
M 		73
B 47.7
(-3)
A 		74.8
(3)
A 		74.4
(2.9)
A 		73.7
(2.8)
A 		27
C 68.7
(1.2)
A 		78.1
(2.9)
A 		78.5
(3)
M 		45.2
(-3)
A 		33
avr 62
(-3) 		98.4
(3) 		80.5
(0) 		65.4
(-2.4) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 974
1 2 3 4 5 6 range
A 65.9
(-2.9)
A 		55.8
(-3)
A 		55.1
(-3)
A 		125.1
(-2.6)
P 		531.1
(-0)
P 		1013.3
(3)
P 		958
B 60.5
(-2.8)
A 		39
(-3)
A 		49.8
(-2.9)
A 		79.9
(-2.6)
P 		646.5
(2.2)
P 		735.3
(3)
P 		696
C 77.3
(-2.8)
A 		49.5
(-3)
A 		70.6
(-2.8)
A 		75.3
(-2.8)
P 		867.2
(3)
P 		726.6
(2)
P 		818
avr 67.9
(-2.8) 		48.1
(-3) 		58.5
(-2.9) 		93.4
(-2.7) 		681.6
(1.9) 		825.1
(3) 		777
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 25.3
(1.3)
A 		30.9
(3)
M 		23.2
(0.6)
A 		11.3
(-3)
M 		20
B 15.2
(-3)
A 		18.5
(3)
A 		17.3
(0.8)
A 		15.7
(-2.1)
A 		3
C 22.7
(1.6)
A 		22.5
(1.5)
A 		27.4
(3)
M 		7.6
(-3)
A 		20
avr 21.1
(1.6) 		24
(3) 		22.6
(2.3) 		11.5
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 269
1 2 3 4 5 6 range
A 12.1
(-3)
A 		19.8
(-2.8)
A 		12
(-3)
A 		31.7
(-2.5)
P 		160.3
(0.8)
P 		246.7
(3)
P 		235
B 21.1
(-2.8)
A 		13
(-3)
A 		12.1
(-3)
A 		21.2
(-2.8)
P 		262.7
(2.7)
P 		274.2
(3)
P 		262
C 28.7
(-2.7)
A 		15.1
(-3)
A 		18
(-2.9)
A 		15.1
(-3)
P 		280.6
(3)
P 		243.2
(2.2)
P 		266
avr 20.6
(-2.8) 		16
(-3) 		14
(-3) 		22.7
(-2.8) 		234.5
(2.5) 		254.7
(3) 		241
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177777_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10061
Sequence Type Exemplar sequence
Representative Public ID C04G2.9 NCBI
Target Description C04G2.9 /REP_DB=WormBase Gene ID /WP=CE05217 /TR=Q17633 /GB=CAA94678.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069437(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069437 NCBI Caenorhabditis elegans C04G2.9 (C04G2.9) mRNA, complete cds. 11/11 None
SNAP00000040140 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10112997:10114112:1 11/11 None
GENEFINDER00000040146 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10111837:10114112:1 11/11 None
C04G2.9 ENSEMBL cdna:known chromosome:CEL140:IV:10112862:10114149:1 gene:C04G2.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10113002-10114118(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04G2.9
Entrez Gene 177878 Entrez gene
SwissProt Q17633 EMBL-EBI
WormBase CE05217 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94678 Hypothetical protein C04G2.9 [Caenorhabditis elegans] ref|NP_501838.1| C04G2.9 [Caenorhabditis elegans] 0.0
blast CAA22257 Hypothetical protein Y69E1A.2 [Caenorhabditis elegans] ref|NP_502039.1| Y69E1A.2 [Caenorhabditis elegans] 0.0
blast CAE73710 Hypothetical protein CBG21223 [Caenorhabditis briggsae] 0.0
blast CAE56304 Hypothetical protein CBG23962 [Caenorhabditis briggsae] 0.0
blast CAA22257 Hypothetical protein Y69E1A.2 [Caenorhabditis elegans] ref|NP_502039.1| Y69E1A.2 [Caenorhabditis elegans] 1.0E-179
blast CAE73710 Hypothetical protein CBG21223 [Caenorhabditis briggsae] 1.0E-174
Sequence
Target Sequence 
>C. ELEGANS:177777_AT
ccaccacattgcccatgtgctgtgtgcggagctgctccaccaccaccaaagccagtgcca
cgtgtcgagagagacgaatggatggacattcgtgagggagatccatggccgactcgccaa
cttgtcaaggctcttgacaagactctggacacccttccaggagtcaatccagaccaatat
gttgctctctggtacatgcaaggtgaacctgttatgggtcgtgtctggaatgaaggagga
aaggtggctgccaacttctcgtggttcaacaacgagtattgcaagaatgttggatctatc
cagcttctcatctatcttccggacagtgttcgtggttttgactatggatggatcccattc
ccggaggctgctcagtttggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCACATTGCCCATGTGCTGTGT 80 273 424 Antisense
GCCAGTGCCACGTGTCGAGAGAGAC 109 281 474 Antisense
GCTCTTGACAAGACTCTGGACACCC 263 299 553 Antisense
CCCTTCCAGGAGTCAATCCAGACCA 190 259 575 Antisense
AATCCAGACCAATATGTTGCTCTCT 655 167 589 Antisense
GCTCTCTGGTACATGCAAGGTGAAC 344 299 607 Antisense
TGTTGGATCTATCCAGCTTCTCATC 565 563 711 Antisense
TCATCTATCTTCCGGACAGTGTTCG 3 621 731 Antisense
TCCGGACAGTGTTCGTGGTTTTGAC 588 593 741 Antisense
GACTATGGATGGATCCCATTCCCGG 242 373 763 Antisense
TCCCGGAGGCTGCTCAGTTTGGAGA 4 597 782 Antisense
Sequence Source Affymetrix Proprietary Database