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[177776_at]

Description C33D3.3 /REP_DB=WormBase Gene ID /WP=CE02154 /TR=Q18369 /GB=CAA90027.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 61      4grp_high_8_8 > 47      6grp_highest_nonorm > 80      6grp_total > 61      4grp_total > 48      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 319
1 2 3 4 range
A 54.3
(-3)
A 		262.3
(0.9)
P 		373.6
(3)
P 		152.6
(-1.2)
P 		319
B 130.2
(-2.4)
P 		307.2
(2.2)
P 		339.6
(3)
P 		105.1
(-3)
P 		235
C 77.3
(-3)
P 		331.3
(2.6)
P 		347.2
(3)
P 		169.6
(-0.9)
P 		270
avr 87.3
(-3) 		300.3
(1.8) 		353.5
(3) 		142.4
(-1.8) 		266

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 345
1 2 3 4 5 6 range
A 175.5
(-1)
P 		202.8
(-0.4)
P 		324.9
(2.1)
P 		367.1
(3)
P 		182.2
(-0.8)
P 		78.5
(-3)
P 		289
B 69.5
(-3)
P 		151
(-1.5)
P 		400.4
(3)
P 		358.1
(2.2)
P 		227.2
(-0.1)
P 		110.4
(-2.3)
P 		331
C 119.1
(-2.5)
P 		247.5
(-0.1)
P 		382
(2.4)
P 		414.6
(3)
P 		181.4
(-1.3)
P 		90.8
(-3)
P 		324
avr 121.4
(-2.4) 		200.4
(-0.8) 		369.1
(2.8) 		379.9
(3) 		196.9
(-0.8) 		93.2
(-3) 		287
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 19.8
(-3)
A 		56.9
(-0.1)
P 		97.7
(3)
P 		22.3
(-2.8)
P 		78
B 41.5
(-1)
P 		75.9
(2.7)
P 		78.7
(3)
P 		22.4
(-3)
P 		56
C 25.6
(-3)
P 		95.2
(1.4)
P 		121
(3)
P 		28.6
(-2.8)
P 		95
avr 29
(-2.6) 		76
(1.1) 		99.1
(3) 		24.4
(-3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 32.3
(-1.9)
P 		72.1
(1.3)
P 		70.8
(1.2)
P 		93.1
(3)
P 		55
(-0.1)
P 		19.1
(-3)
P 		74
B 24.2
(-3)
P 		50.3
(-0.9)
P 		97.2
(3)
P 		94.8
(2.8)
P 		92.3
(2.6)
P 		41.2
(-1.6)
P 		73
C 44.1
(-1.8)
P 		75.5
(1.1)
P 		97.2
(3)
P 		83.4
(1.8)
P 		58.7
(-0.5)
P 		30.4
(-3)
P 		67
avr 33.5
(-2.7) 		66
(0.6) 		88.4
(2.8) 		90.4
(3) 		68.7
(0.8) 		30.2
(-3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177776_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16848
Sequence Type Exemplar sequence
Representative Public ID C33D3.3 NCBI
Target Description C33D3.3 /REP_DB=WormBase Gene ID /WP=CE02154 /TR=Q18369 /GB=CAA90027.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077355(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077355 NCBI Caenorhabditis elegans C33D3.3 (C33D3.3) mRNA, complete cds. 11/11 None
GENEFINDER00000027791 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10485310:10489702:1 11/11 None
C33D3.3 ENSEMBL cdna:known chromosome:CEL140:X:10485228:10486586:1 gene:C33D3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027786 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10485227-10486586(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33D3.3
Entrez Gene 183156 Entrez gene
SwissProt Q18369 EMBL-EBI
WormBase CE02154 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90027 Hypothetical protein C33D3.3 [Caenorhabditis elegans] ref|NP_509756.1| C33D3.3 [Caenorhabditis elegans] 0.0
blast CAA90028 Hypothetical protein C33D3.4 [Caenorhabditis elegans] ref|NP_509757.1| C33D3.4 [Caenorhabditis elegans] 1.0E-125
Sequence
Target Sequence 
>C. ELEGANS:177776_AT
tgaaaaagccagctaccatgcctcctgtacaaaacaaactgccaagcactcctccagaac
atgtttgtgaaaaatgctcgcattgtactgcaattatatgcagtcattgttacccctaca
actcgtattcgcatccaaaaactacgaagcttgtctgcagaaactgtcatctgtattttc
atcactacaagactgaccgtccagttaagcttgaaatgaaacggaagtcacgaaagaaca
aaaaacataattttgaggaaaagcaaccaaatcaaagtattcaatcaaccagtcatcatt
ataacccggttgtgaccgaaaacactaaaaattatatccaattcgacacagtgtttgaga
atctggacacgtttcacccgtttgacagcaatattaatccaagaaatgactactgggatc
agcagtatcaccaagcttcaccatcatcactgcagccaacatttttcattggtggctata
gtcaagattattatcaaaatggatattcacaccaaatgcctaccacgtttgaagattact
attcttatccccaaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAAAAGCCAGCTACCATGCCTCC 323 573 347 Antisense
CAAGCACTCCTCCAGAACATGTTTG 549 185 389 Antisense
TATGCAGTCATTGTTACCCCTACAA 32 657 443 Antisense
CTACAACTCGTATTCGCATCCAAAA 463 227 462 Antisense
CATCACTACAAGACTGACCGTCCAG 264 211 526 Antisense
CAGTCATCATTATAACCCGGTTGTG 669 205 636 Antisense
CGTTTCACCCGTTTGACAGCAATAT 500 247 716 Antisense
CAGCAGTATCACCAAGCTTCACCAT 181 205 766 Antisense
ATCACTGCAGCCAACATTTTTCATT 187 29 792 Antisense
TGGATATTCACACCAAATGCCTACC 704 549 846 Antisense
AGATTACTATTCTTATCCCCAAAAT 539 63 879 Antisense
Sequence Source Affymetrix Proprietary Database