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[177775_at]

Description ZC373.5 /REP_DB=WormBase Gene ID /WP=CE02378 /TR=Q23261 /GB=CAA88977.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 40      4grp_high_8_8 > 22      6grp_total > 50      4grp_total > 09      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 95.1
(-3)
A 		146.1
(-0.2)
P 		118.7
(-1.7)
P 		205.7
(3)
P 		111
B 103.2
(1.8)
P 		83
(-2.7)
P 		81.5
(-3)
M 		108.5
(3)
P 		27
C 104.3
(-3)
P 		108.1
(-2.5)
A 		125.9
(-0.4)
P 		153.6
(3)
P 		49
avr 100.9
(-3) 		112.4
(-1.7) 		108.7
(-2.1) 		155.9
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 76.6
(-2.1)
A 		96.3
(-1.1)
P 		154
(1.8)
P 		177.9
(3)
P 		58
(-3)
P 		85.1
(-1.6)
P 		120
B 104.7
(-1.5)
P 		121.8
(-0.2)
P 		166.5
(3)
P 		127.7
(0.2)
P 		83.7
(-3)
P 		152.9
(2)
P 		83
C 127
(0.8)
P 		109.2
(-0.2)
P 		169
(3)
P 		168.1
(3)
P 		56.6
(-3)
M 		72.9
(-2.1)
P 		112
avr 102.8
(-0.7) 		109.1
(-0.3) 		163.2
(3) 		157.9
(2.7) 		66.1
(-3) 		103.6
(-0.7) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 34.6
(3)
A 		31.7
(-0.9)
P 		31
(-1.8)
P 		30.1
(-3)
P 		5
B 32.9
(3)
P 		20.5
(-2.3)
P 		18.9
(-3)
M 		23.1
(-1.2)
P 		14
C 34.5
(-0.1)
P 		31.1
(-1.3)
A 		43.9
(3)
P 		25.9
(-3)
P 		18
avr 34
(3) 		27.8
(-1.9) 		31.3
(0.9) 		26.4
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 14.1
(-3)
A 		34.3
(0.9)
P 		33.5
(0.8)
P 		45.1
(3)
P 		17.5
(-2.3)
P 		20.7
(-1.7)
P 		31
B 36.4
(-2.3)
P 		40.5
(-1.3)
P 		40.4
(-1.3)
P 		33.8
(-3)
P 		34
(-2.9)
P 		57
(3)
P 		23
C 47.1
(3)
P 		33.3
(0.1)
P 		43
(2.1)
P 		33.8
(0.2)
P 		18.3
(-3)
M 		24.4
(-1.7)
P 		29
avr 32.5
(0.5) 		36
(1.9) 		39
(3) 		37.6
(2.5) 		23.3
(-3) 		34
(1.1) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177775_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17255
Sequence Type Exemplar sequence
Representative Public ID ZC373.5 NCBI
Target Description ZC373.5 /REP_DB=WormBase Gene ID /WP=CE02378 /TR=Q23261 /GB=CAA88977.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077289(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077289 NCBI Caenorhabditis elegans ZC373.5 (ZC373.5) mRNA, complete cds. 11/11 None
GENEFINDER00000017673 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10071895:10074203:-1 11/11 None
SNAP00000017666 ENSEMBL cdna:SNAP chromosome:CEL140:X:10072620:10074203:-1 11/11 None
ZC373.5 ENSEMBL cdna:known chromosome:CEL140:X:10072197:10074214:-1 gene:ZC373.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10072619-10074203(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC373.5
Entrez Gene 181218 Entrez gene
SwissProt Q23261 EMBL-EBI
WormBase CE37460 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1584709_AT similar to APAF1 interacting protein cfa
CANINE_2:CFA.11310.1.A1_AT similar to APAF1 interacting protein cfa
CANINE_2:CFAAFFX.11260.1.S1_S_AT similar to APAF1 interacting protein cfa
DROSOPHILA_2:1641025_AT dm
DROSGENOME1:145029_AT dm
CHICKEN:GGAAFFX.11795.1.S1_S_AT similar to cDNA sequence AB028863 gga
HG-U133_PLUS_2:218698_AT likely ortholog of mouse monocyte macrophage 19 hs
HG-U133A:218698_AT likely ortholog of mouse monocyte macrophage 19 hs
HG-U133A_2:218698_AT likely ortholog of mouse monocyte macrophage 19 hs
HU35KSUBD:RC_AA251829_AT likely ortholog of mouse monocyte macrophage 19 hs
U133_X3P:G7705723_3P_AT likely ortholog of mouse monocyte macrophage 19 hs
HG-U95B:56219_AT likely ortholog of mouse monocyte macrophage 19 hs
HG-U133_PLUS_2:232630_AT Likely ortholog of mouse monocyte macrophage 19 hs
HG-U133B:232630_AT Likely ortholog of mouse monocyte macrophage 19 hs
U133_X3P:HS.222374.0.S1_3P_AT Likely ortholog of mouse monocyte macrophage 19 hs
HG-U95E:87362_AT Likely ortholog of mouse monocyte macrophage 19 hs
MOUSE430_2:1418254_AT APAF1 interacting protein mm
MOUSE430A_2:1418254_AT APAF1 interacting protein mm
MOE430A:1418254_AT APAF1 interacting protein mm
MG-U74AV2:104752_AT APAF1 interacting protein mm
MU19KSUBB:TC26748_AT APAF1 interacting protein, mRNA (cDNA clone MGC:41093 IMAGE:1245515) mm
MU19KSUBB:TC26748_G_AT APAF1 interacting protein, mRNA (cDNA clone MGC:41093 IMAGE:1245515) mm
RG-U34C:RC_AI172106_AT similar to MMRP19 rn
RAE230A:1367536_AT similar to MMRP19 rn
RAE230B:1367536_AT similar to MMRP19 rn
RAT230_2:1367536_AT similar to MMRP19 rn
Protein Similarities
Method ID Description E-Value
blast CAA88977 Hypothetical protein ZC373.5 [Caenorhabditis elegans] ref|NP_509690.2| ZC373.5 [Caenorhabditis elegans] 1.0E-150
blast CAA88977 Hypothetical protein ZC373.5 [Caenorhabditis elegans] ref|NP_509690.2| ZC373.5 [Caenorhabditis elegans] 1.0E-149
blast CAA88977 Hypothetical protein ZC373.5 [Caenorhabditis elegans] ref|NP_509690.2| ZC373.5 [Caenorhabditis elegans] 1.0E-146
blast CAE58773 Hypothetical protein CBG01968 [Caenorhabditis briggsae] 1.0E-70
blast CAE58773 Hypothetical protein CBG01968 [Caenorhabditis briggsae] 3.0E-70
blast CAE58773 Hypothetical protein CBG01968 [Caenorhabditis briggsae] 8.0E-67
blast CAE58775 Hypothetical protein CBG01970 [Caenorhabditis briggsae] 1.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR001303 EMBL-EBI Class II aldolase/adducin, N-terminal 9.4E-25
Pfam IPR001303 EMBL-EBI Class II aldolase/adducin, N-terminal 2.4E-14
Sequence
Target Sequence 
>C. ELEGANS:177775_AT
ggatcactgtttcatcgtgctcagtgctcttctcgctgattatgaaagagactggaagcg
aatgcgtaattcatactcactcaaaatgtgccaacctcattacgcaactcatcaaatcca
acgttttcgaaatttcccatcaggaatatattaaagggatatacgatccattttccggaa
aagctctcaaatactccgacactttgaccattcctatcatagacaatatgccgagtgaaa
gccaacttttggtatgtgcaatcaatagatcaccaatgcaaccagattgctttatcaata
ttgcactttttcaggaaccaataagaggtgttctcgagaactatccccaagcaattgcag
tgctcgtcaggaatcacggactttttgtgtggggcccgacttgggaatcaacgaagatca
tgacggagtgcatcgattatctgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCACTGTTTCATCGTGCTCAGT 479 511 299 Antisense
TCAGTGCTCTTCTCGCTGATTATGA 264 623 319 Antisense
GAATGCGTAATTCATACTCACTCAA 288 331 358 Antisense
AAATGTGCCAACCTCATTACGCAAC 5 121 382 Antisense
CAACGTTTTCGAAATTTCCCATCAG 516 183 417 Antisense
AAAAGCTCTCAAATACTCCGACACT 359 131 477 Antisense
ACACTTTGACCATTCCTATCATAGA 561 109 497 Antisense
TTCTCGAGAACTATCCCCAAGCAAT 491 693 629 Antisense
GCAGTGCTCGTCAGGAATCACGGAC 52 313 655 Antisense
TGTGTGGGGCCCGACTTGGGAATCA 1 551 684 Antisense
GACGGAGTGCATCGATTATCTGTTG 120 377 720 Antisense
Sequence Source Affymetrix Proprietary Database