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[177773_at]

Description T24C2.4 /REP_DB=WormBase Gene ID /WP=CE03718 /TR=Q22727 /GB=CAA92202.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 21      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 24.1
(-2)
P 		45.7
(0.8)
A 		16
(-3)
A 		62.8
(3)
A 		47
B 53.6
(3)
P 		13.3
(-1.7)
A 		25.4
(-0.3)
A 		2.3
(-3)
A 		51
C 22.9
(-1.6)
A 		14
(-3)
A 		17.5
(-2.4)
A 		51.8
(3)
A 		38
avr 33.5
(1.3) 		24.3
(-1.5) 		19.6
(-3) 		39
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 60.5
(3)
A 		35.2
(-0.2)
A 		13.2
(-3)
A 		12.9
(-3)
A 		27.1
(-1.2)
A 		32.6
(-0.5)
A 		48
B 43
(3)
A 		25.6
(-1)
A 		19.9
(-2.3)
A 		34.4
(1)
A 		16.6
(-3)
A 		23.1
(-1.5)
A 		26
C 27.7
(-1.7)
A 		29.1
(-1.3)
A 		46.8
(3)
A 		26.7
(-1.9)
A 		33.6
(-0.2)
A 		22.2
(-3)
A 		25
avr 43.7
(3) 		30
(-1.3) 		26.6
(-2.4) 		24.7
(-3) 		25.8
(-2.7) 		26
(-2.6) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 8.8
(1.8)
P 		9.9
(3)
A 		4.2
(-3)
A 		9.2
(2.3)
A 		6
B 17.1
(3)
P 		3.3
(-2)
A 		5.9
(-1)
A 		0.5
(-3)
A 		17
C 7.6
(1.6)
A 		4
(-3)
A 		6.1
(-0.3)
A 		8.7
(3)
A 		5
avr 11.2
(3) 		5.7
(-2.7) 		5.4
(-3) 		6.1
(-2.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 11.1
(2.1)
A 		12.5
(3)
A 		2.9
(-3)
A 		3.3
(-2.8)
A 		8.2
(0.3)
A 		7.9
(0.1)
A 		10
B 14.9
(3)
A 		8.5
(-0.8)
A 		4.8
(-3)
A 		9.1
(-0.4)
A 		6.7
(-1.9)
A 		8.6
(-0.7)
A 		10
C 10.3
(1.5)
A 		8.9
(0.2)
A 		11.9
(3)
A 		5.4
(-3)
A 		10.9
(2.1)
A 		7.4
(-1.2)
A 		7
avr 12.1
(3) 		10
(1) 		6.5
(-2.4) 		5.9
(-3) 		8.6
(-0.4) 		8
(-1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177773_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17453
Sequence Type Exemplar sequence
Representative Public ID T24C2.4 NCBI
Target Description T24C2.4 /REP_DB=WormBase Gene ID /WP=CE03718 /TR=Q22727 /GB=CAA92202.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078018(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078018 NCBI Caenorhabditis elegans T24C2.4 (T24C2.4) mRNA, complete cds. 11/11 None
SNAP00000015286 ENSEMBL cdna:SNAP chromosome:CEL140:X:14540605:14541977:-1 11/11 None
GENEFINDER00000015293 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14540605:14541977:-1 11/11 None
T24C2.4 ENSEMBL cdna:known chromosome:CEL140:X:14540605:14541977:-1 gene:T24C2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14540604-14541977(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24C2.4
Entrez Gene 188841 Entrez gene
SwissProt Q22727 EMBL-EBI
WormBase CE03718 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92202 Hypothetical protein T24C2.4 [Caenorhabditis elegans] ref|NP_510419.1| T24C2.4 [Caenorhabditis elegans] 0.0
blast AAK29865 Hypothetical protein Y22D7AR.11 [Caenorhabditis elegans] ref|NP_497448.1| Y22D7AR.11 [Caenorhabditis elegans] 4.0E-28
blast CAB02775 Hypothetical protein C25D7.4 [Caenorhabditis elegans] ref|NP_506704.1| C25D7.4 [Caenorhabditis elegans] 5.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.7E-47
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.1E-11
Sequence
Target Sequence 
>C. ELEGANS:177773_AT
aaatcaatactttcaatctttcctattggtttttcaacaataatccaacgttccgcgata
cagaactttcgaaacttattgaaactttgaagaaagtggaaatcgttaaagcaagaaaac
tacgattgaacagattatccacaaaggaaattactgcggtgctgcaatttttcgaacccc
aacttttggaaactatccaaattgaacatgctgggaaagctgaccagtttaatgaaattg
tgcaattacaacagtggagaagtgcaaacacagtaacagttaggtttctacacgacaagc
caactgtgccgctcgagaattacttccatttcaatgtttttcaaacatttgttgttgatt
tttctgttgacgatgcaataaaaattcgggatattctcttgaaatctcccaacttcatat
tttgccacctcgattttccaccgtacagtttaaacttgaatgatattgctagagtttttt
gtccgggacaggatgcaactgatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCAATACTTTCAATCTTTCCTA 338 117 389 Antisense
ATAATCCAACGTTCCGCGATACAGA 512 25 428 Antisense
CAAAGGAAATTACTGCGGTGCTGCA 194 193 530 Antisense
GCGGTGCTGCAATTTTTCGAACCCC 93 293 544 Antisense
GTTAGGTTTCTACACGACAAGCCAA 427 439 667 Antisense
CCAACTGTGCCGCTCGAGAATTACT 523 275 688 Antisense
GCCGCTCGAGAATTACTTCCATTTC 607 285 696 Antisense
TCTCTTGAAATCTCCCAACTTCATA 410 613 783 Antisense
TCTCCCAACTTCATATTTTGCCACC 578 609 793 Antisense
GCTAGAGTTTTTTGTCCGGGACAGG 28 281 856 Antisense
GTCCGGGACAGGATGCAACTGATGA 68 477 869 Antisense
Sequence Source Affymetrix Proprietary Database