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[177772_at]

Description T19A6.3 /REP_DB=WormBase Gene ID /WP=CE20085 /TR=Q9XXN3 /GB=CAA16513.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_high_8_8 > 51      6grp_highest_nonorm > 61      6grp_total > 81      4grp_total > 52      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 658
1 2 3 4 range
A 684.2
(2.3)
P 		756
(3)
P 		618.6
(1.7)
P 		132.3
(-3)
P 		624
B 755.8
(3)
P 		655.3
(2.1)
P 		663.4
(2.1)
P 		107.5
(-3)
P 		648
C 765.6
(3)
P 		728.9
(2.6)
P 		580.9
(1.2)
P 		140.4
(-3)
M 		625
avr 735.2
(3) 		713.4
(2.8) 		621
(1.9) 		126.7
(-3) 		609

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 403
1 2 3 4 5 6 range
A 333.3
(-0.5)
P 		555.7
(3)
P 		374.1
(0.1)
P 		512.1
(2.3)
P 		350.2
(-0.3)
P 		177
(-3)
P 		379
B 258.6
(-1.6)
P 		548.4
(3)
P 		389.9
(0.5)
P 		458
(1.6)
P 		452.5
(1.5)
P 		171.3
(-3)
P 		377
C 271.5
(-1.1)
P 		498
(2.6)
P 		276.9
(-1)
P 		525.5
(3)
P 		359.3
(0.3)
P 		152.3
(-3)
P 		373
avr 287.8
(-1) 		534
(3) 		347
(-0.1) 		498.5
(2.4) 		387.3
(0.6) 		166.9
(-3) 		367
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 249.1
(3)
P 		164.1
(0.8)
P 		161.7
(0.7)
P 		19.4
(-3)
P 		230
B 241
(3)
P 		161.9
(0.8)
P 		153.7
(0.6)
P 		22.9
(-3)
P 		218
C 253.4
(3)
P 		209.6
(1.9)
P 		202.5
(1.7)
P 		23.7
(-3)
M 		230
avr 247.8
(3) 		178.5
(1.2) 		172.6
(1) 		22
(-3) 		226

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 61.4
(-2.3)
P 		197.6
(3)
P 		81.5
(-1.5)
P 		129.9
(0.4)
P 		105.7
(-0.6)
P 		43.1
(-3)
P 		155
B 90
(-1.7)
P 		182.6
(2.9)
P 		94.7
(-1.5)
P 		121.3
(-0.1)
P 		183.9
(3)
P 		63.9
(-3)
P 		120
C 100.6
(-0.1)
P 		152
(3)
P 		70.5
(-1.8)
P 		105.7
(0.2)
P 		116.3
(0.9)
P 		51
(-3)
P 		101
avr 84
(-1.5) 		177.4
(3) 		82.2
(-1.6) 		119
(0.2) 		135.3
(1) 		52.7
(-3) 		125
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177772_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1811
Sequence Type Exemplar sequence
Representative Public ID T19A6.3 NCBI
Target Description T19A6.3 /REP_DB=WormBase Gene ID /WP=CE20085 /TR=Q9XXN3 /GB=CAA16513.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059877(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059877 NCBI Caenorhabditis elegans T19A6.4 (T19A6.4) mRNA, complete cds. 11/11 None
GENEFINDER00000004355 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8407131:8411954:1 11/11 None
SNAP00000004352 ENSEMBL cdna:SNAP chromosome:CEL140:I:8409539:8411954:1 11/11 None
T19A6.4 ENSEMBL cdna:known chromosome:CEL140:I:8409287:8411608:1 gene:T19A6.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8407061-8411885(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19A6.4
Entrez Gene 259993 Entrez gene
SwissProt Q95QA2 EMBL-EBI
WormBase CE38224 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70102 Hypothetical protein T19A6.4 [Caenorhabditis elegans] ref|NP_492278.2| T19A6.4 [Caenorhabditis elegans] 0.0
blast CAC70102 Hypothetical protein T19A6.4 [Caenorhabditis elegans] ref|NP_492278.2| T19A6.4 [Caenorhabditis elegans] 1.0E-166
blast CAE67269 Hypothetical protein CBG12716 [Caenorhabditis briggsae] 1.0E-138
blast CAE67269 Hypothetical protein CBG12716 [Caenorhabditis briggsae] 1.0E-116
blast AAK21483 Hypothetical protein W02D3.4 [Caenorhabditis elegans] ref|NP_491924.1| W02D3.4 [Caenorhabditis elegans] 9.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492278.2 9 2-22,47-69,82-101,116-138,189-211,226-248,261-283,290-312,319-341
T19A6.4 9 50-72,84-106,110-132,139-161,171-191,255-274,289-311,318-340,350-372
GENEFINDER00000004355 11 40-62,77-99,143-165,175-197,202-224,261-283,334-356,371-393,406-428,435-457,464-486
SNAP00000004352 9 2-22,47-69,82-101,116-138,189-211,226-248,261-283,290-312,319-341
Sequence
Target Sequence 
>C. ELEGANS:177772_AT
tcaagagccacgtctacattccaaaaaaacgaaacaattctgagagtcttacgtcgggag
gagaaattccatcaaagaaaagtatggcaacgcaatcctcagaagaagatgatatagttc
aacacccacatcatgtttctccaattgttagaatagtatgcttccttgcagcaattttca
gtggcctattctatggaagcatgtgcactccagtaacatttatccaaaataggccagatt
tatacccaggtgcaccaactgaagggcttccttatctattttcatttttctgtggaatca
tgccaatgtctactttcgtattggtcatctattctgcagtcaaaaagaacaatccatctc
ttccatcatatttggtacttccatcacttttcggaggacttttatttgcaattggaatgg
gaggatttttcattggaaatcaaaaactttcacaaacaatttcctatccaatctgttcat
ttgcacctggtttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAGAGCCACGTCTACATTCCAAA 600 631 860 Antisense
TCAACACCCACATCATGTTTCTCCA 89 631 978 Antisense
GCAGCAATTTTCAGTGGCCTATTCT 659 311 1027 Antisense
GTGCACTCCAGTAACATTTATCCAA 243 481 1062 Antisense
AGGCCAGATTTATACCCAGGTGCAC 488 51 1090 Antisense
AAGGGCTTCCTTATCTATTTTCATT 15 159 1121 Antisense
ATCATGCCAATGTCTACTTTCGTAT 334 29 1156 Antisense
GTATTGGTCATCTATTCTGCAGTCA 63 453 1177 Antisense
AATCCATCTCTTCCATCATATTTGG 371 167 1210 Antisense
GGTACTTCCATCACTTTTCGGAGGA 176 501 1233 Antisense
AATCTGTTCATTTGCACCTGGTTTG 359 169 1329 Antisense
Sequence Source Affymetrix Proprietary Database