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[177769_at]

Description D1086.7 /REP_DB=WormBase Gene ID /WP=CE17618 /TR=O62125 /GB=CAB04022.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 12      6grp_total > 10      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 117.3
(2)
P 		65.1
(-3)
A 		87.1
(-0.9)
P 		127.6
(3)
P 		63
B 93.5
(-1.5)
P 		97.6
(-1.4)
P 		56.5
(-3)
A 		206.8
(3)
P 		150
C 145.3
(3)
P 		57.2
(-2)
A 		40.1
(-3)
A 		136.6
(2.5)
P 		105
avr 118.7
(0.6) 		73.3
(-2.2) 		61.2
(-3) 		157
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 56.6
(-2.9)
A 		87.1
(-0.7)
M 		136.5
(3)
P 		55.4
(-3)
A 		108.4
(0.9)
P 		58.9
(-2.7)
P 		81
B 92.5
(-0.6)
P 		130.6
(2.7)
P 		134
(3)
P 		64.6
(-3)
A 		95.7
(-0.3)
P 		95.5
(-0.3)
P 		69
C 77
(-0.9)
A 		127
(3)
P 		49.7
(-3)
P 		89
(0.1)
A 		98.5
(0.8)
P 		76
(-1)
P 		77
avr 75.4
(-2.2) 		114.9
(3) 		106.7
(1.9) 		69.7
(-3) 		100.9
(1.1) 		76.8
(-2.1) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 42.7
(3)
P 		14.1
(-3)
A 		22.8
(-1.2)
P 		18.7
(-2)
P 		29
B 29.8
(0.2)
P 		24.1
(-0.9)
P 		13.1
(-3)
A 		44.1
(3)
P 		31
C 48.1
(3)
P 		16.5
(-2.6)
A 		14
(-3)
A 		23
(-1.4)
P 		34
avr 40.2
(3) 		18.2
(-2.6) 		16.6
(-3) 		28.6
(0.1) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 10.4
(-3)
A 		31
(2.5)
M 		29.7
(2.2)
P 		14
(-2)
A 		32.7
(3)
P 		14.3
(-2)
P 		22
B 32.2
(0.4)
P 		43.5
(3)
P 		32.5
(0.5)
P 		17.1
(-3)
A 		38.9
(2)
P 		35.6
(1.2)
P 		26
C 28.5
(0.6)
A 		38.8
(3)
P 		12.6
(-3)
P 		17.9
(-1.8)
A 		31.9
(1.4)
P 		25.4
(-0.1)
P 		26
avr 23.7
(-0.9) 		37.8
(3) 		24.9
(-0.6) 		16.3
(-3) 		34.5
(2.1) 		25.1
(-0.5) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177769_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14383
Sequence Type Exemplar sequence
Representative Public ID D1086.7 NCBI
Target Description D1086.7 /REP_DB=WormBase Gene ID /WP=CE17618 /TR=O62125 /GB=CAB04022.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074092(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074092 NCBI Caenorhabditis elegans D1086.7 (D1086.7) mRNA, complete cds. 11/11 None
D1086.7 ENSEMBL cdna:known chromosome:CEL140:V:14087276:14089675:1 gene:D1086.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017533 5/11 Cross Hyb Matching Probes None
GENEFINDER00000017549 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14087275-14089675(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1086.7
Entrez Gene 183934 Entrez gene
SwissProt O62125 EMBL-EBI
WormBase CE17618 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04022 Hypothetical protein D1086.7 [Caenorhabditis elegans] ref|NP_506493.1| D1086.7 [Caenorhabditis elegans] 0.0
blast CAB04023 Hypothetical protein D1086.6 [Caenorhabditis elegans] ref|NP_506492.2| D1086.6 [Caenorhabditis elegans] 6.0E-11
Sequence
Target Sequence 
>C. ELEGANS:177769_AT
gatttccgatcaatacttttgccattcggaaattttacctttgcgcaacccctcatcacg
tttgccacagaagacatgttgattcgtgctttcaaatcaatagttttaataagccttcca
aattttgctttattaatcccggataactgctttagttctgaaataagaaacgaagcgagg
gactgtacaaatagactttctccaatgcttgataatctgaaatcggtgctagctggaacc
cgaaaatcctcaaatttaatcaaggatatcactgatttctgtgatttctcattaaaatgc
tacaagacactccaattgtgttctggaattgatcccaatctaattaccaatctcgatggt
gtatgtgatatgtacagctttaaagctaaaaaattcgatggatgctaccaaaaaatgact
acaagtattgaagacaattgtgtctacagcttcttcatgacaccggtgtatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTCCGATCAATACTTTTGCCAT 125 429 460 Antisense
GCCATTCGGAAATTTTACCTTTGCG 587 279 480 Antisense
CCTCATCACGTTTGCCACAGAAGAC 196 269 510 Antisense
GAAGACATGTTGATTCGTGCTTTCA 436 339 529 Antisense
AATCCCGGATAACTGCTTTAGTTCT 541 167 594 Antisense
AATAGACTTTCTCCAATGCTTGATA 613 171 649 Antisense
GGTGCTAGCTGGAACCCGAAAATCC 383 499 684 Antisense
CACTGATTTCTGTGATTTCTCATTA 151 199 729 Antisense
ATCCCAATCTAATTACCAATCTCGA 668 37 791 Antisense
GACAATTGTGTCTACAGCTTCTTCA 606 363 892 Antisense
GCTTCTTCATGACACCGGTGTATAT 351 305 908 Antisense
Sequence Source Affymetrix Proprietary Database