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[177767_at]

Description D1086.4 /REP_DB=WormBase Gene ID /WP=CE09062 /TR=O17724 /GB=CAB04017.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 96      4grp_high_8_8 > 11      6grp_total > 87      4grp_total > 21      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 221.7
(1.4)
P 		137.5
(-1.3)
P 		84.9
(-3)
P 		269.5
(3)
P 		185
B 172
(-0.3)
P 		176.3
(-0.2)
P 		101.3
(-3)
A 		260.3
(3)
P 		159
C 214.3
(0.4)
P 		124.8
(-2)
P 		87.7
(-3)
P 		311.4
(3)
P 		224
avr 202.7
(0.5) 		146.2
(-1.3) 		91.3
(-3) 		280.4
(3) 		189

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 300
1 2 3 4 5 6 range
A 159.5
(-1.8)
A 		103.7
(-3)
P 		156.3
(-1.9)
P 		185.4
(-1.3)
P 		247.7
(0)
P 		390.8
(3)
P 		287
B 95.4
(-2.9)
P 		124.9
(-2.1)
P 		153.1
(-1.4)
P 		90.9
(-3)
P 		193.4
(-0.3)
P 		318.8
(3)
P 		228
C 97.8
(-3)
P 		155.9
(-1.7)
A 		114.1
(-2.6)
P 		202.3
(-0.7)
P 		187.4
(-1)
P 		371.2
(3)
P 		273
avr 117.6
(-3) 		128.2
(-2.7) 		141.2
(-2.4) 		159.5
(-2) 		209.5
(-0.7) 		360.3
(3) 		243
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 80.7
(3)
P 		29.8
(-2.2)
P 		22.2
(-3)
P 		39.5
(-1.2)
P 		59
B 54.8
(2.9)
P 		43.5
(0.8)
P 		23.5
(-3)
A 		55.5
(3)
P 		32
C 70.9
(3)
P 		35.9
(-2.2)
P 		30.6
(-3)
P 		52.5
(0.3)
P 		40
avr 68.8
(3) 		36.4
(-1.5) 		25.4
(-3) 		49.2
(0.3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 29.4
(-3)
A 		36.9
(-2.3)
P 		34
(-2.6)
P 		47
(-1.4)
P 		74.8
(1.1)
P 		95.1
(3)
P 		66
B 33.2
(-2.4)
P 		41.6
(-1.9)
P 		37.2
(-2.2)
P 		24.1
(-3)
P 		78.6
(0.4)
P 		118.9
(3)
P 		95
C 36.3
(-2.5)
P 		47.6
(-1.8)
A 		29
(-3)
P 		40.7
(-2.3)
P 		60.6
(-1)
P 		124.3
(3)
P 		95
avr 33
(-3) 		42
(-2.3) 		33.4
(-3) 		37.3
(-2.7) 		71.3
(-0.1) 		112.8
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177767_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14605
Sequence Type Exemplar sequence
Representative Public ID D1086.4 NCBI
Target Description D1086.4 /REP_DB=WormBase Gene ID /WP=CE09062 /TR=O17724 /GB=CAB04017.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074094(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074094 NCBI Caenorhabditis elegans D1086.4 (D1086.4) mRNA, complete cds. 11/11 None
SNAP00000017536 ENSEMBL cdna:SNAP chromosome:CEL140:V:14093469:14094914:1 11/11 None
GENEFINDER00000017552 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14093469:14094914:1 11/11 None
D1086.4 ENSEMBL cdna:known chromosome:CEL140:V:14093469:14094914:1 gene:D1086.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14093468-14094914(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1086.4
Entrez Gene 183932 Entrez gene
SwissProt O17724 EMBL-EBI
WormBase CE09062 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04017 Hypothetical protein D1086.4 [Caenorhabditis elegans] ref|NP_506495.1| D1086.4 [Caenorhabditis elegans] 1.0E-125
blast CAB04017 Hypothetical protein D1086.4 [Caenorhabditis elegans] ref|NP_506495.1| D1086.4 [Caenorhabditis elegans] 1.0E-103
Sequence
Target Sequence 
>C. ELEGANS:177767_AT
aggtgcacgtttcaagagtcttccacaaaaagaacaagacgaagtagtgaatgaagcttt
ttcgaatcttcgagaatatttgaaaaagagggaacctttctatgcaaagctccggaaagc
taactccaagtattcctcaaagcccaaagaaagagaaaaatctgtcgactccaatgacga
agctgatagacgcaataagggaaataagaaaactcaaaaaaatgcgagtaagaactgcca
aattgagaaatcgtcgaataattctggaattctcaaaaaaagtggatcaggaatcagcgt
ggcttctaaaccaaaaaaatcagttgcatttgcaccaggagtatacgaagatttaagcac
cgacgatgatttagagtttttaaattctgtgattgtcaacagtgatcgtccaacttcaca
gtgtgataatccggcacgtagaatgtgtggaagaccgccaacaaaacacagggacactga
acagtcacaggaaatcactggaagcaagaagcagaaaatttttccgactcctcacgaaaa
acctgcctggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGTGCACGTTTCAAGAGTCTTCCA 87 55 186 Antisense
GGAACCTTTCTATGCAAAGCTCCGG 502 527 276 Antisense
AAAGCTCCGGAAAGCTAACTCCAAG 303 123 291 Antisense
TAACTCCAAGTATTCCTCAAAGCCC 514 639 306 Antisense
ATCTGTCGACTCCAATGACGAAGCT 649 31 345 Antisense
GGAATCAGCGTGGCTTCTAAACCAA 340 533 475 Antisense
GTTGCATTTGCACCAGGAGTATACG 475 437 508 Antisense
GATTGTCAACAGTGATCGTCCAACT 423 435 576 Antisense
GATCGTCCAACTTCACAGTGTGATA 694 417 589 Antisense
GACCGCCAACAAAACACAGGGACAC 451 381 638 Antisense
CTCCTCACGAAAAACCTGCCTGGTG 382 233 713 Antisense
Sequence Source Affymetrix Proprietary Database