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[177766_at]

Description F15D3.8 /REP_DB=WormBase Gene ID /WP=CE15855 /TR=O62174 /GB=CAB02957.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 26      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 1.4
(-3)
A 		23.4
(0.5)
A 		2.1
(-2.9)
A 		39.5
(3)
A 		38
B 1.4
(-3)
A 		3.1
(-2.7)
A 		7
(-1.9)
A 		32.4
(3)
A 		31
C 2
(-3)
A 		43.7
(3)
A 		3.8
(-2.7)
A 		35
(1.7)
A 		42
avr 1.6
(-3) 		23.4
(0.8) 		4.3
(-2.5) 		35.6
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 17.9
(-1.6)
A 		6.9
(-2.6)
A 		32.4
(-0.3)
A 		1.7
(-3)
A 		46
(0.8)
A 		71.1
(3)
A 		69
B 2
(-3)
A 		7.3
(-2.5)
A 		25.1
(-0.8)
A 		14.9
(-1.8)
A 		30.9
(-0.2)
A 		65
(3)
A 		63
C 3.7
(-3)
A 		16.5
(-2)
A 		3.1
(-3)
A 		81.5
(3)
A 		62.7
(1.6)
A 		69.3
(2.1)
M 		78
avr 7.9
(-3) 		10.2
(-2.8) 		20.2
(-1.8) 		32.7
(-0.5) 		46.5
(0.8) 		68.5
(3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.5
(-3)
A 		5.1
(2.2)
A 		0.5
(-3)
A 		5.8
(3)
A 		5
B 0.4
(-3)
A 		0.8
(-2.6)
A 		1.6
(-1.9)
A 		6.9
(3)
A 		7
C 0.7
(-3)
A 		12.6
(3)
A 		1.3
(-2.7)
A 		5.9
(-0.4)
A 		12
avr 0.5
(-3) 		6.2
(3) 		1.1
(-2.4) 		6.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 3.3
(-2)
A 		2.4
(-2.3)
A 		7.1
(-0.6)
A 		0.4
(-3)
A 		13.9
(1.8)
A 		17.3
(3)
A 		17
B 0.7
(-3)
A 		2.4
(-2.6)
A 		6.1
(-1.6)
A 		3.9
(-2.2)
A 		12.5
(0)
A 		24.2
(3)
A 		24
C 1.4
(-2.8)
A 		5
(-1.9)
A 		0.8
(-3)
A 		16.4
(1.2)
A 		20.3
(2.2)
A 		23.2
(3)
M 		22
avr 1.8
(-3) 		3.3
(-2.5) 		4.7
(-2.1) 		6.9
(-1.5) 		15.6
(1.2) 		21.6
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177766_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1000
Sequence Type Exemplar sequence
Representative Public ID F15D3.8 NCBI
Target Description F15D3.8 /REP_DB=WormBase Gene ID /WP=CE15855 /TR=O62174 /GB=CAB02957.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060553
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000000124 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11588056:11590078:-1 None
F15D3.8 ENSEMBL cdna:known chromosome:CEL140:I:11588056:11590108:-1 gene:F15D3.8 None
NM_060553 NCBI Caenorhabditis elegans F15D3.8 (F15D3.8) mRNA, complete cds. None
SNAP00000000121 ENSEMBL cdna:SNAP chromosome:CEL140:I:11574148:11590108:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11587986-11590039(-) 96.35 100.0
Public Domain and Genome References
Gene Title
Ensembl F15D3.8
Entrez Gene 184528 Entrez gene
SwissProt O62174 EMBL-EBI
WormBase CE34479 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02957 Hypothetical protein F15D3.8 [Caenorhabditis elegans] ref|NP_492954.2| F15D3.8 [Caenorhabditis elegans] 1.0E-167
blast CAB02957 Hypothetical protein F15D3.8 [Caenorhabditis elegans] ref|NP_492954.2| F15D3.8 [Caenorhabditis elegans] 1.0E-159
blast CAB02957 Hypothetical protein F15D3.8 [Caenorhabditis elegans] ref|NP_492954.2| F15D3.8 [Caenorhabditis elegans] 1.0E-121
blast CAB02955 Hypothetical protein F15D3.6 [Caenorhabditis elegans] ref|NP_492952.1| F15D3.6 [Caenorhabditis elegans] 3.0E-90
blast CAE69583 Hypothetical protein CBG15800 [Caenorhabditis briggsae] 6.0E-83
blast CAB07167 Hypothetical protein C17H1.3 [Caenorhabditis elegans] ref|NP_493295.1| C17H1.3 [Caenorhabditis elegans] 1.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR006797 EMBL-EBI MSF1 1.1E-77
Sequence
Target Sequence 
>C. ELEGANS:177766_AT
atcgggaaccgtgtggagaaccacttacaaattttggatagctattctggttttcgagat
aacatgcttgaagcagatctgatccaacagaacgtgcgcggagatgtgtctttgagctcc
actatctctgaaactggaagagctatcaaaaagtgtataaccgatggagatgctgataac
ggttatatagagtacgaagtggattatgttggacagctgagacgttcggtttatacagaa
atcgatgaatttcgagaatacattgcggacgagaagaatattagcaaagaaatcggtatt
gcgtgtgctatttacgtaaaaaaactcgagcgcattgccgattgtaaggaattaaatttg
ctgtgcgatcaacttcaagctgctatcgaaggaaaaaatggcgaaattattaaaacttgc
gagatttttatcgacaaattcacccagaaattcgaatcgatcagtaatggttcaacgtcc
gattttcataggcttcggttgaaggctccggagcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGGGAACCGTGTGGAGAACCACT 50 3 307 Antisense
TTGGATAGCTATTCTGGTTTTCGAG 77 709 340 Antisense
GAACGTGCGCGGAGATGTGTCTTTG 49 349 396 Antisense
GATGTGTCTTTGAGCTCCACTATCT 354 409 409 Antisense
TGAGCTCCACTATCTCTGAAACTGG 17 569 419 Antisense
GTTGGACAGCTGAGACGTTCGGTTT 709 433 514 Antisense
AGAAATCGGTATTGCGTGTGCTATT 93 73 594 Antisense
AAACTCGAGCGCATTGCCGATTGTA 228 127 628 Antisense
TGCTGTGCGATCAACTTCAAGCTGC 355 581 665 Antisense
GGTTCAACGTCCGATTTTCATAGGC 283 505 775 Antisense
GCTTCGGTTGAAGGCTCCGGAGCGT 647 301 798 Antisense
Sequence Source Affymetrix Proprietary Database