[Home] | [Total List]

[177765_at]

Description C01A2.1 /REP_DB=WormBase Gene ID /WP=CE07783 /TR=O02206 /GB=CAB02697.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 51      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 91.7
(0.3)
P 		120
(3)
A 		94.8
(0.6)
A 		58.2
(-3)
A 		62
B 75
(-0.1)
A 		92.1
(1.1)
A 		119.7
(3)
A 		32.3
(-3)
A 		87
C 112.3
(-0.6)
A 		160.2
(3)
A 		80.5
(-2.9)
A 		79.8
(-3)
A 		80
avr 93
(0.2) 		124.1
(3) 		98.3
(0.7) 		56.8
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 119.8
(3)
A 		69.5
(-0.8)
A 		92.3
(0.9)
A 		39.9
(-3)
A 		61
(-1.4)
A 		68.5
(-0.9)
P 		80
B 74.7
(3)
A 		52.8
(0.9)
A 		67.2
(2.3)
A 		47.9
(0.4)
A 		65.3
(2.1)
A 		12
(-3)
A 		63
C 80.8
(1.4)
A 		69.1
(-0.1)
A 		93.6
(3)
A 		52.6
(-2.1)
A 		63.7
(-0.8)
A 		45.8
(-3)
A 		48
avr 91.8
(3) 		63.8
(-0.4) 		84.4
(2.1) 		46.8
(-2.4) 		63.3
(-0.4) 		42.1
(-3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 33.4
(3)
P 		26.1
(1.2)
A 		24.8
(0.9)
A 		8.5
(-3)
A 		25
B 23.9
(1.9)
A 		22.8
(1.6)
A 		27.7
(3)
A 		6.9
(-3)
A 		21
C 37.2
(1.4)
A 		46.1
(3)
A 		28.1
(-0.3)
A 		13.4
(-3)
A 		33
avr 31.5
(2.9) 		31.7
(3) 		26.9
(1.7) 		9.6
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 22.1
(1.9)
A 		24.7
(3)
A 		20.1
(1.1)
A 		10.1
(-3)
A 		18.4
(0.4)
A 		16.7
(-0.3)
P 		15
B 26
(2.9)
A 		17.6
(0.6)
A 		16.3
(0.2)
A 		12.7
(-0.8)
A 		26.5
(3)
A 		4.5
(-3)
A 		22
C 30
(3)
A 		21.1
(0.2)
A 		23.8
(1.1)
A 		10.6
(-3)
A 		20.6
(0.1)
A 		15.3
(-1.5)
A 		19
avr 26
(3) 		21.1
(1) 		20.1
(0.6) 		11.1
(-3) 		21.8
(1.3) 		12.2
(-2.6) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177765_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2272
Sequence Type Exemplar sequence
Representative Public ID C01A2.1 NCBI
Target Description C01A2.1 /REP_DB=WormBase Gene ID /WP=CE07783 /TR=O02206 /GB=CAB02697.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060958(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060958 NCBI Caenorhabditis elegans C01A2.1 (C01A2.1) mRNA, complete cds. 11/11 None
SNAP00000025720 ENSEMBL cdna:SNAP chromosome:CEL140:I:13416916:13417980:-1 11/11 None
GENEFINDER00000025737 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13416916:13417980:-1 11/11 None
C01A2.1 ENSEMBL cdna:known chromosome:CEL140:I:13416916:13418626:-1 gene:C01A2.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013815 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13416846-13418557(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01A2.1
Entrez Gene 182049 Entrez gene
SwissProt O02206 EMBL-EBI
WormBase CE07783 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02697 Hypothetical protein C01A2.1 [Caenorhabditis elegans] ref|NP_493359.1| C01A2.1 [Caenorhabditis elegans] 0.0
blast AAB63927 Hypothetical protein ZC132.4 [Caenorhabditis elegans] ref|NP_504186.1| ZC132.4 [Caenorhabditis elegans] 1.0E-18
blast AAB63927 Hypothetical protein ZC132.4 [Caenorhabditis elegans] ref|NP_504186.1| ZC132.4 [Caenorhabditis elegans] 2.0E-18
blast AAA81759 Hypothetical protein ZK402.1 [Caenorhabditis elegans] ref|NP_508264.1| ZK402.1 [Caenorhabditis elegans] 2.0E-18
Sequence
Target Sequence 
>C. ELEGANS:177765_AT
cccgacgagctcgagaccgtgaaagtgatgctcaacaaaacgaacgagaagatcgagaag
attcatgaaaccatcatcgacctgcaaaagaaaaccgataatagctctattgctgtcaag
caaatgaaagccaagatggacttaagagccatcagagaacaagaggagcgaaccgaaaag
gtttcggtcatcttgaccgaaaccgaaaaaccatgcaagttccccttgaaaagcgatccc
aaagaatttcagggaaacatcccacgaaaggtcgacaaaggaccgagtattcctcgaagg
aaaccgaagaactcagtgttcaaaaacgataagaaagttcccatgagggacttcacgacg
gatgaggaggagaagacaccgcgatgtgtgtactgccattatcatcatcattccaatcga
tgcgggcacacgaaaggaagtttcgaaagaaagaaaattctctacaaagacaaccgttgc
cacttgtgcctggcaaaacgagaaggaagacatcaatgtactccaaagccatgtacgtac
tgtaaaaggatcaatcatcattgttccatctgtatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCGACGAGCTCGAGACCGTGAAAG 573 257 799 Antisense
TCATGAAACCATCATCGACCTGCAA 58 621 861 Antisense
ATAATAGCTCTATTGCTGTCAAGCA 47 27 896 Antisense
CGAAAAACCATGCAAGTTCCCCTTG 319 247 1002 Antisense
TTCCCCTTGAAAAGCGATCCCAAAG 300 695 1018 Antisense
AGACACCGCGATGTGTGTACTGCCA 702 71 1172 Antisense
GTACTGCCATTATCATCATCATTCC 487 459 1188 Antisense
CATTCCAATCGATGCGGGCACACGA 351 215 1207 Antisense
AAAGACAACCGTTGCCACTTGTGCC 259 123 1264 Antisense
ACTCCAAAGCCATGTACGTACTGTA 474 57 1318 Antisense
ATCATCATTGTTCCATCTGTATCGA 208 31 1352 Antisense
Sequence Source Affymetrix Proprietary Database