[Home] | [Total List]

[177764_at]

Description T11B7.2 /REP_DB=WormBase Gene ID /WP=CE03648 /TR=Q22388 /GB=CAA90988.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 81      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 63      6grp_total > 91      4grp_total > 49      6grp_highest_sub > 04_05      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 483
1 2 3 4 range
A 321.8
(-3)
P 		767.4
(3)
P 		729.3
(2.5)
P 		362.8
(-2.4)
P 		446
B 367.4
(-3)
P 		703.4
(3)
P 		687.5
(2.7)
P 		481.6
(-1)
P 		336
C 317.5
(-2.5)
P 		718.7
(3)
P 		612.6
(1.5)
P 		284
(-3)
P 		435
avr 335.6
(-3) 		729.8
(3) 		676.5
(2.2) 		376.1
(-2.4) 		394

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 494
1 2 3 4 5 6 range
A 791.7
(2.2)
P 		500.6
(-1.8)
P 		598.8
(-0.4)
P 		851.8
(3)
P 		805
(2.4)
P 		411.3
(-3)
P 		441
B 414.7
(-3)
P 		546.1
(-1.2)
P 		485.9
(-2)
P 		755.7
(1.8)
P 		842.4
(3)
P 		477.2
(-2.1)
P 		428
C 547.6
(-1.6)
P 		634.6
(-0.5)
P 		440.5
(-3)
P 		904.9
(3)
P 		753.8
(1)
P 		498.7
(-2.2)
P 		464
avr 584.7
(-1) 		560.4
(-1.4) 		508.4
(-2.3) 		837.5
(3) 		800.4
(2.4) 		462.4
(-3) 		375
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 117.2
(-0.2)
P 		166.6
(1.9)
P 		190.7
(3)
P 		53.1
(-3)
P 		138
B 117.2
(-1.8)
P 		173.7
(3)
P 		159.3
(1.8)
P 		102.6
(-3)
P 		71
C 105.1
(-0.9)
P 		206.6
(2.8)
P 		213.5
(3)
P 		47.9
(-3)
P 		166
avr 113.2
(-0.7) 		182.3
(2.7) 		187.8
(3) 		67.9
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 145.9
(-1.1)
P 		178
(0.3)
P 		130.4
(-1.7)
P 		216
(1.9)
P 		242.9
(3)
P 		100.1
(-3)
P 		143
B 144.3
(-2.3)
P 		181.8
(-1.3)
P 		118
(-3)
P 		200.1
(-0.8)
P 		342.3
(3)
P 		177.9
(-1.4)
P 		224
C 203
(1.1)
P 		193.6
(0.7)
P 		112.1
(-3)
P 		182
(0.2)
P 		243.9
(3)
P 		167
(-0.5)
P 		132
avr 164.4
(-1.3) 		184.5
(-0.5) 		120.2
(-3) 		199.4
(0) 		276.4
(3) 		148.3
(-1.9) 		156
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177764_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10188
Sequence Type Exemplar sequence
Representative Public ID T11B7.2 NCBI
Target Description T11B7.2 /REP_DB=WormBase Gene ID /WP=CE03648 /TR=Q22388 /GB=CAA90988.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069130(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069130 NCBI Caenorhabditis elegans T11B7.2 (T11B7.2) mRNA, complete cds. 11/11 None
SNAP00000029865 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8843603:8844473:-1 11/11 None
GENEFINDER00000029872 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8843603:8844473:-1 11/11 None
T11B7.2 ENSEMBL cdna:known chromosome:CEL140:IV:8843603:8844473:-1 gene:T11B7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8843608-8844479(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T11B7.2
Entrez Gene 188408 Entrez gene
SwissProt Q22388 EMBL-EBI
WormBase CE03648 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90988 Hypothetical protein T11B7.2 [Caenorhabditis elegans] ref|NP_501531.1| T11B7.2 [Caenorhabditis elegans] 3.0E-29
Sequence
Target Sequence 
>C. ELEGANS:177764_AT
atgtctccaggatcatcgactggaatggtttcggaaaaatgcggagacgctgaatcaaag
cgtgcaccatacccaccaccccttcgtcttgcacgaagagtgtgctacccacagtacact
caaaaatcgcttgacatgcgtgcacaggaaaagttggtgggaaggaagagggatatgaaa
atggcaagatttctcgcaaagcaggctaaagaaagcaaagaaatggtcaaaaaggcggcc
aagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTCCAGGATCATCGACTGGAA 189 49 13 Antisense
GATCATCGACTGGAATGGTTTCGGA 50 421 23 Antisense
GGTTTCGGAAAAATGCGGAGACGCT 248 505 39 Antisense
TGAATCAAAGCGTGCACCATACCCA 674 575 63 Antisense
CACCCCTTCGTCTTGCACGAAGAGT 146 201 89 Antisense
GAAGAGTGTGCTACCCACAGTACAC 529 337 107 Antisense
CCCACAGTACACTCAAAAATCGCTT 54 257 120 Antisense
AAATCGCTTGACATGCGTGCACAGG 62 119 136 Antisense
GACATGCGTGCACAGGAAAAGTTGG 178 369 145 Antisense
GGCAAGATTTCTCGCAAAGCAGGCT 529 533 195 Antisense
GAAATGGTCAAAAAGGCGGCCAAGG 255 361 232 Antisense
Sequence Source Affymetrix Proprietary Database