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[177763_at]

Description T23G4.5 /REP_DB=WormBase Gene ID /WP=CE16457 /TR=O18128 /GB=CAB05285.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 42.1
(-3)
A 		105.3
(2.8)
A 		53
(-2)
A 		107.6
(3)
A 		66
B 44.8
(-0.1)
A 		36.9
(-3)
A 		53.3
(3)
A 		44
(-0.4)
A 		16
C 72.7
(1.7)
A 		54.6
(-0.1)
A 		26.8
(-3)
A 		85.3
(3)
A 		59
avr 53.2
(-1.5) 		65.6
(0.7) 		44.4
(-3) 		79
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 45.2
(1.2)
A 		23.6
(-1.2)
A 		10.4
(-2.8)
A 		33.6
(-0.1)
A 		60.7
(3)
A 		8.3
(-3)
A 		52
B 15.7
(-3)
A 		16
(-2.9)
A 		15.5
(-3)
A 		43.1
(2.2)
A 		47.2
(3)
A 		19.7
(-2.2)
A 		32
C 13
(-2.5)
A 		39.4
(-0.2)
A 		7.7
(-3)
A 		37.3
(-0.4)
A 		76.4
(3)
A 		8.7
(-2.9)
A 		69
avr 24.6
(-1.4) 		26.3
(-1.2) 		11.2
(-3) 		38
(0.2) 		61.4
(3) 		12.2
(-2.9) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 15.3
(-2)
A 		22.9
(3)
A 		13.8
(-3)
A 		15.8
(-1.7)
A 		9
B 14.3
(3)
A 		9.1
(-3)
A 		12.4
(0.8)
A 		9.4
(-2.7)
A 		5
C 24.1
(3)
A 		15.7
(-0.4)
A 		9.3
(-3)
A 		14.4
(-0.9)
A 		15
avr 17.9
(3) 		15.9
(1) 		11.8
(-3) 		13.2
(-1.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 8.3
(-0.7)
A 		8.4
(-0.6)
A 		2.3
(-2.9)
A 		8.5
(-0.6)
A 		18.3
(3)
A 		2
(-3)
A 		16
B 5.5
(-2.3)
A 		5.3
(-2.4)
A 		3.8
(-3)
A 		11.4
(-0)
A 		19.2
(3)
A 		7.4
(-1.6)
A 		15
C 4.8
(-2.3)
A 		12
(-0.4)
A 		2
(-3)
A 		7.5
(-1.5)
A 		24.7
(3)
A 		2.9
(-2.8)
A 		23
avr 6.2
(-1.8) 		8.6
(-1) 		2.7
(-3) 		9.1
(-0.9) 		20.7
(3) 		4.1
(-2.5) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177763_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9498
Sequence Type Exemplar sequence
Representative Public ID T23G4.5 NCBI
Target Description T23G4.5 /REP_DB=WormBase Gene ID /WP=CE16457 /TR=O18128 /GB=CAB05285.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070243(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070243 NCBI Caenorhabditis elegans T23G4.5 (T23G4.5) mRNA, complete cds. 11/11 None
SNAP00000014424 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13678920:13680302:1 11/11 None
GENEFINDER00000014428 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13673773:13680302:1 11/11 None
T23G4.5 ENSEMBL cdna:known chromosome:CEL140:IV:13678920:13680302:1 gene:T23G4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13678925-13680308(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23G4.5
Entrez Gene 188815 Entrez gene
SwissProt O18128 EMBL-EBI
WormBase CE16457 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05286 Hypothetical protein T23G4.4 [Caenorhabditis elegans] ref|NP_502643.1| T23G4.4 [Caenorhabditis elegans] 0.0
blast AAC48045 Hypothetical protein K09E10.2 [Caenorhabditis elegans] ref|NP_502345.1| K09E10.2 [Caenorhabditis elegans] 0.0
blast AAC48044 Hypothetical protein K09E10.1 [Caenorhabditis elegans] ref|NP_502344.1| K09E10.1 [Caenorhabditis elegans] 0.0
blast CAB05285 Hypothetical protein T23G4.5 [Caenorhabditis elegans] ref|NP_502644.1| T23G4.5 [Caenorhabditis elegans] 6.0E-43
blast CAE62001 Hypothetical protein CBG06009 [Caenorhabditis briggsae] 2.0E-25
blast CAA92976 Hypothetical protein T05E11.8 [Caenorhabditis elegans] ref|NP_502075.1| T05E11.8 [Caenorhabditis elegans] 2.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 1.2E-58
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR003677 EMBL-EBI Protein of unknown function, DUF 148 1.2E-58
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000014428 10 35-57,83-105,141-163,172-189,199-221,261-278,283-302,309-331,341-358,370-389
Sequence
Target Sequence 
>C. ELEGANS:177763_AT
gttcactggtctttatcgcaattgcccttatcgccgttgtcagtgctggtccaggagaca
aggatcaaccaaaaccagatcataagaagggaccaggaggattccatcatttcttcccaa
aattctttggaaatgtttccgaggagggaaagaaggaaattggagctcttttcaaaaatc
aggatttgacgttggccgaggtggacaccaagattgctgctctcgctgagaaatatggag
ttgctgcggcctacaaggagcacaaagcaaaggaagccaccaatgaagctgaagccaaga
agaagaccgcttcagtgatcagcaatctgtctgcagtttcagccaagctcaccgcaattc
acgacaacaaaagcctcacccgtaaggctcaacgtgaagctatcgctgctcttcgcaagg
aacatgaagccgaggttgccgctcttgatttcattggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCACTGGTCTTTATCGCAATTGC 418 445 20 Antisense
CAGGAGGATTCCATCATTTCTTCCC 116 207 113 Antisense
GGATTTGACGTTGGCCGAGGTGGAC 651 507 201 Antisense
AGGTGGACACCAAGATTGCTGCTCT 206 59 218 Antisense
AAATATGGAGTTGCTGCGGCCTACA 430 115 250 Antisense
GACCGCTTCAGTGATCAGCAATCTG 195 383 324 Antisense
TGTCTGCAGTTTCAGCCAAGCTCAC 412 557 347 Antisense
AAGCCTCACCCGTAAGGCTCAACGT 271 147 390 Antisense
GGCTCAACGTGAAGCTATCGCTGCT 179 537 405 Antisense
TATCGCTGCTCTTCGCAAGGAACAT 599 657 420 Antisense
GTTGCCGCTCTTGATTTCATTGGAA 647 439 454 Antisense
Sequence Source Affymetrix Proprietary Database