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[177761_at]

Description E03A3.8 /REP_DB=WormBase Gene ID /WP=CE02960 /TR=Q19047 /GB=CAA86233.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 20      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 51.5
(-1.8)
A 		59.2
(-1.2)
A 		36
(-3)
A 		115
(3)
A 		79
B 56.2
(3)
A 		53.3
(2.5)
A 		20.5
(-3)
A 		46.3
(1.3)
A 		36
C 65.9
(0)
A 		34
(-2)
A 		19.4
(-3)
A 		111.3
(3)
A 		92
avr 57.9
(-0) 		48.8
(-0.9) 		25.3
(-3) 		90.9
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 44.3
(2.7)
A 		31.2
(0.9)
A 		37.9
(1.8)
A 		3.5
(-3)
A 		46.5
(3)
A 		23.3
(-0.2)
A 		43
B 42.9
(2)
A 		49
(3)
A 		22.4
(-1.2)
A 		17.8
(-1.9)
A 		10.6
(-3)
A 		41.7
(1.9)
P 		38
C 20.9
(-2)
A 		63.4
(3)
A 		63.6
(3)
A 		12.2
(-3)
A 		17.7
(-2.4)
A 		19.7
(-2.1)
A 		51
avr 36
(1.1) 		47.9
(3) 		41.3
(1.9) 		11.2
(-3) 		24.9
(-0.8) 		28.2
(-0.2) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 18.7
(3)
A 		12.8
(-0.8)
A 		9.4
(-3)
A 		16.8
(1.8)
A 		9
B 17.9
(3)
A 		13.2
(0.9)
A 		4.7
(-3)
A 		9.9
(-0.6)
A 		13
C 21.8
(3)
A 		9.8
(-1.8)
A 		6.8
(-3)
A 		18.8
(1.8)
A 		15
avr 19.5
(3) 		11.9
(-0.6) 		7
(-3) 		15.2
(0.9) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 8.2
(0.3)
A 		11.1
(1.7)
A 		8.3
(0.4)
A 		0.9
(-3)
A 		14
(3)
A 		5.7
(-0.8)
A 		13
B 14.9
(2.3)
A 		16.3
(3)
A 		5.4
(-2.5)
A 		4.7
(-2.8)
A 		4.3
(-3)
A 		15.5
(2.6)
P 		12
C 7.8
(-1.1)
A 		19.3
(3)
A 		16.2
(1.9)
A 		2.5
(-3)
A 		5.7
(-1.9)
A 		6.6
(-1.5)
A 		17
avr 10.3
(0.5) 		15.6
(3) 		10
(0.4) 		2.7
(-3) 		8
(-0.5) 		9.3
(0.1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177761_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6279
Sequence Type Exemplar sequence
Representative Public ID E03A3.8 NCBI
Target Description E03A3.8 /REP_DB=WormBase Gene ID /WP=CE02960 /TR=Q19047 /GB=CAA86233.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065415(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065415 NCBI Caenorhabditis elegans E03A3.8 (E03A3.8) mRNA, complete cds. 11/11 None
E03A3.8 ENSEMBL cdna:known chromosome:CEL140:III:4077275:4077790:1 gene:E03A3.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016653 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4077274-4077790(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E03A3.8
Entrez Gene 3565700 Entrez gene
SwissProt Q19047 EMBL-EBI
WormBase CE02960 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86233 Hypothetical protein E03A3.8 [Caenorhabditis elegans] ref|NP_497816.1| E03A3.8 [Caenorhabditis elegans] 6.0E-19
Sequence
Target Sequence 
>C. ELEGANS:177761_AT
atgaatttcatttctctgtcaattttttcagaacatttaaaatcactttttccgtttttc
actcctaatccttttttgaatgcaaatgtggctgtaaacgacgacgtctcctcgccgaac
tcctctgtcactgccaactacgggcatggtacgcgtgcatgttatacccatcgaatgggc
agatttttatcccccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAATTTCATTTCTCTGTCAATTT 309 43 13 Antisense
TTTCATTTCTCTGTCAATTTTTTCA 288 673 18 Antisense
TTTCACTCCTAATCCTTTTTTGAAT 237 673 69 Antisense
ACTCCTAATCCTTTTTTGAATGCAA 181 99 73 Antisense
AATGTGGCTGTAAACGACGACGTCT 477 163 97 Antisense
GCTGTAAACGACGACGTCTCCTCGC 18 295 103 Antisense
CTCTGTCACTGCCAACTACGGGCAT 704 231 135 Antisense
AACTACGGGCATGGTACGCGTGCAT 457 121 148 Antisense
GGTACGCGTGCATGTTATACCCATC 576 503 160 Antisense
GCGTGCATGTTATACCCATCGAATG 11 291 165 Antisense
GAATGGGCAGATTTTTATCCCCCAA 639 325 185 Antisense
Sequence Source Affymetrix Proprietary Database