[Home] | [Total List]

[177759_at]

Description F57G8.8 /REP_DB=WormBase Gene ID /WP=CE18779 /TR=Q9XU94 /GB=CAB05529.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 11      6grp_cgc > 92      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 11.6
(-1.1)
A 		22.8
(1.8)
A 		4.3
(-3)
A 		27.6
(3)
A 		23
B 11.9
(3)
A 		4.9
(-1.9)
A 		7.2
(-0.3)
A 		3.4
(-3)
A 		9
C 1.6
(-2.9)
A 		2.2
(-2.9)
A 		0.6
(-3)
A 		72.2
(3)
A 		72
avr 8.4
(-2.1) 		10
(-1.8) 		4
(-3) 		34.4
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 3.9
(-2.4)
A 		2.4
(-3)
A 		16.7
(3)
A 		3.3
(-2.6)
A 		9.7
(0.1)
A 		15.7
(2.6)
A 		14
B 14
(-0.7)
A 		23.9
(0.9)
A 		36.3
(3)
A 		34.1
(2.6)
A 		9.8
(-1.4)
A 		0.4
(-3)
A 		36
C 0.8
(-3)
A 		19.8
(3)
A 		13.7
(1.1)
A 		15.4
(1.6)
A 		1.4
(-2.8)
A 		7.2
(-1)
A 		19
avr 6.2
(-3) 		15.4
(0.5) 		22.2
(3) 		17.6
(1.3) 		7
(-2.7) 		7.8
(-2.4) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.2
(1.8)
A 		5
(3)
A 		1.1
(-3)
A 		4
(1.5)
A 		4
B 3.8
(3)
A 		1.2
(-2)
A 		1.7
(-1.1)
A 		0.7
(-3)
A 		3
C 0.5
(-2.9)
A 		0.6
(-2.8)
A 		0.2
(-3)
A 		12.2
(3)
A 		12
avr 2.8
(-0.7) 		2.3
(-1.3) 		1
(-3) 		5.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.7
(-3)
A 		0.9
(-2.6)
A 		3.6
(2.6)
A 		0.8
(-2.8)
A 		2.9
(1.3)
A 		3.8
(3)
A 		3
B 4.9
(0.2)
A 		7.9
(2.3)
A 		8.8
(2.9)
A 		9
(3)
A 		4
(-0.4)
A 		0.1
(-3)
A 		9
C 0.3
(-3)
A 		6.1
(3)
A 		3.5
(0.3)
A 		3.1
(-0.1)
A 		0.4
(-2.9)
A 		2.4
(-0.8)
A 		6
avr 2
(-3) 		5
(2.5) 		5.3
(3) 		4.3
(1.2) 		2.4
(-2.3) 		2.1
(-2.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177759_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14763
Sequence Type Exemplar sequence
Representative Public ID F57G8.8 NCBI
Target Description F57G8.8 /REP_DB=WormBase Gene ID /WP=CE18779 /TR=Q9XU94 /GB=CAB05529.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074725
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F57G8.8 ENSEMBL cdna:known chromosome:CEL140:V:16323380:16330060:-1 gene:F57G8.8 A 
NM_074725 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-36) (srv-36) mRNA, complete cds. None
GENEFINDER00000042083 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16321674:16330060:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16329846-16331470(-) 98.78 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srv-36
Ensembl F57G8.8
Entrez Gene 186469 Entrez gene
SwissProt Q9XU94 EMBL-EBI
WormBase CE35184 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05529 Hypothetical protein F57G8.8 [Caenorhabditis elegans] ref|NP_507126.2| Serpentine Receptor, class V family member (srv-36) [Caenorhabditis elegans] 0.0
blast CAB05529 Hypothetical protein F57G8.8 [Caenorhabditis elegans] ref|NP_507126.2| Serpentine Receptor, class V family member (srv-36) [Caenorhabditis elegans] 1.0E-114
blast CAE56564 Hypothetical protein CBG24302 [Caenorhabditis briggsae] 6.0E-87
blast CAE56564 Hypothetical protein CBG24302 [Caenorhabditis briggsae] 8.0E-80
blast T22878 hypothetical protein F57G8.2 - Caenorhabditis elegans 1.0E-78
blast T22878 hypothetical protein F57G8.2 - Caenorhabditis elegans 2.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507126.2 7 10-31,43-65,75-97,102-124,158-180,210-232,263-285
F57G8.8 7 10-31,43-65,75-97,102-124,158-180,210-232,263-285
GENEFINDER00000042083 5 10-32,45-67,102-124,154-176,207-229
Sequence
Target Sequence 
>C. ELEGANS:177759_AT
gcgcggagcccggaagatatattctcacgacattacacaatggaattttccacaatgtag
atcattaatccctcaaaacatcacaatttctaataaagtctacgcatactcaagcgaaca
aaaaactgttctcaaaaaatcagctatagaaactatcttgatgctcacaacaaattggca
agccgatgtagtaatctatgaaatatttatttttacgccaatttacgcgatagttttatg
gtcaatatggttcatgagacccagaaaatccgcgttcaaaactcattatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGCGGAGCCCGGAAGATATATTCT 5 289 15 Antisense
GATATATTCTCACGACATTACACAA 315 427 30 Antisense
GGAATTTTCCACAATGTAGATCATT 593 533 56 Antisense
ATCATTAATCCCTCAAAACATCACA 131 31 75 Antisense
AAGTCTACGCATACTCAAGCGAACA 217 157 110 Antisense
AAACTATCTTGATGCTCACAACAAA 53 127 164 Antisense
GGCAAGCCGATGTAGTAATCTATGA 226 535 191 Antisense
TTATTTTTACGCCAATTTACGCGAT 227 677 221 Antisense
TTTACGCGATAGTTTTATGGTCAAT 640 673 236 Antisense
ATGAGACCCAGAAAATCCGCGTTCA 199 43 268 Antisense
AAATCCGCGTTCAAAACTCATTATT 307 119 280 Antisense
Sequence Source Affymetrix Proprietary Database