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[177758_at]

Description T22H6.4 /REP_DB=WormBase Gene ID /WP=CE16442 /TR=O18115 /GB=CAA90675.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 18      6grp_cgc > 67      6grp_cgc_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 47.2
(-2.9)
A 		45.9
(-3)
P 		69
(-1.8)
A 		161.5
(3)
P 		116
B 44.8
(-3)
A 		116.3
(1.5)
P 		45.8
(-2.9)
A 		139.3
(3)
P 		95
C 91.1
(-1.2)
P 		96.1
(-1)
P 		50.8
(-3)
M 		187.8
(3)
P 		137
avr 61
(-2.7) 		86.1
(-1.3) 		55.2
(-3) 		162.9
(3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 71.8
(1)
A 		20.3
(-3)
A 		97.2
(3)
P 		37.8
(-1.6)
A 		58.9
(0)
A 		90.2
(2.5)
P 		77
B 47.3
(-1.4)
P 		28.1
(-3)
P 		54.2
(-0.8)
M 		52.4
(-0.9)
A 		99.2
(3)
P 		72.8
(0.8)
P 		71
C 34.1
(-3)
A 		71.5
(1.2)
P 		53.9
(-0.8)
A 		87.9
(3)
A 		59.5
(-0.2)
A 		70.8
(1.1)
P 		54
avr 51.1
(-1.2) 		40
(-3) 		68.4
(1.5) 		59.4
(0.1) 		72.5
(2.1) 		77.9
(3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 17.2
(0.2)
A 		10
(-3)
P 		18
(0.5)
A 		23.6
(3)
P 		14
B 14.3
(-1.8)
A 		28.7
(2.7)
P 		10.6
(-3)
A 		29.7
(3)
P 		19
C 30.2
(2.4)
P 		27.6
(1.2)
P 		17.7
(-3)
M 		31.7
(3)
P 		14
avr 20.6
(-0.6) 		22.1
(0.1) 		15.4
(-3) 		28.3
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 13.2
(-0.6)
A 		7.2
(-3)
A 		21.2
(2.7)
P 		9.6
(-2)
A 		17.8
(1.3)
A 		22
(3)
P 		15
B 16.5
(-1.6)
P 		9.3
(-3)
P 		13.2
(-2.2)
M 		13.9
(-2.1)
A 		40.3
(3)
P 		27.2
(0.5)
P 		31
C 12.7
(-3)
A 		21.8
(2)
P 		13.7
(-2.5)
A 		17.7
(-0.3)
A 		19.2
(0.5)
A 		23.7
(3)
P 		11
avr 14.1
(-2.4) 		12.8
(-3) 		16
(-1.5) 		13.7
(-2.6) 		25.8
(3) 		24.3
(2.3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177758_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17784
Sequence Type Exemplar sequence
Representative Public ID T22H6.4 NCBI
Target Description T22H6.4 /REP_DB=WormBase Gene ID /WP=CE16442 /TR=O18115 /GB=CAA90675.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077734(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077734 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-123) (str-123) mRNA, complete cds. 11/11 None
GENEFINDER00000019117 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12790255:12794734:1 11/11 None
SNAP00000019109 ENSEMBL cdna:SNAP chromosome:CEL140:X:12790913:12791670:1 11/11 None
T22H6.4 ENSEMBL cdna:known chromosome:CEL140:X:12790255:12791670:1 gene:T22H6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12790254-12791670(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-123
Ensembl T22H6.4
Entrez Gene 188769 Entrez gene
SwissProt O18115 EMBL-EBI
WormBase CE16442 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90675 Hypothetical protein T22H6.4 [Caenorhabditis elegans] ref|NP_510135.1| Seven TM Receptor family member (str-123) [Caenorhabditis elegans] 1.0E-176
blast CAA90675 Hypothetical protein T22H6.4 [Caenorhabditis elegans] ref|NP_510135.1| Seven TM Receptor family member (str-123) [Caenorhabditis elegans] 1.0E-152
blast CAA90675 Hypothetical protein T22H6.4 [Caenorhabditis elegans] ref|NP_510135.1| Seven TM Receptor family member (str-123) [Caenorhabditis elegans] 1.0E-119
blast CAE57213 Hypothetical protein CBG00071 [Caenorhabditis briggsae] 1.0E-106
blast CAE57214 Hypothetical protein CBG00072 [Caenorhabditis briggsae] 6.0E-93
blast CAE57213 Hypothetical protein CBG00071 [Caenorhabditis briggsae] 2.0E-87
blast CAA90674 Hypothetical protein T22H6.3 [Caenorhabditis elegans] ref|NP_510134.1| Seven TM Receptor family member (str-124) [Caenorhabditis elegans] 7.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.8E-21
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.3E-91
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.6E-65
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510135.1 7 5-27,40-62,86-108,129-151,196-218,253-275,285-303
T22H6.4 7 5-27,40-62,86-108,129-151,196-218,253-275,285-303
GENEFINDER00000019117 7 5-27,40-62,88-110,131-153,198-220,255-277,287-305
SNAP00000019109 4 9-31,77-99,134-156,166-184
Sequence
Target Sequence 
>C. ELEGANS:177758_AT
tatattcgttgcttggaccatcaccacatatttcccaatgctaccagatgaaatgagaga
agaatattatagcgatgttctgatggataactttctcacagattcccatgaaacatcatt
tttagtaatgatgtataaaacacctcccgatcgcccagaaccggtcgagtggatatattc
ccaattgttagcatgtggatttatgtgttttcaaatgagcacatgtagttttgtgatgct
cttctgcggttacaaagctgttgtacagatgaaacattcggaagttcatatgagttcaaa
aactagaaacttgagtcgacaattaatgatgacgctcggtgctcaaactcttcttccatt
caccactgtctttcttcctgtcggtctcataattgtgttgcctgtgtttggaatagatgt
tggtgttgccgcaaataaaaccgctgcgtttttgggaatatatcccgctcttgatccaat
gatagcaatttttctaattaaggactttcgatattttgtcttttgccgttcagaatcttc
gtatgtatcatctgcactttcattaacttcacacccttcgaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATATTCGTTGCTTGGACCATCACC 436 661 423 Antisense
TCACCACATATTTCCCAATGCTACC 4 625 443 Antisense
GATAACTTTCTCACAGATTCCCATG 475 423 508 Antisense
ATCGCCCAGAACCGGTCGAGTGGAT 245 37 572 Antisense
GATGCTCTTCTGCGGTTACAAAGCT 459 413 657 Antisense
AATGATGACGCTCGGTGCTCAAACT 299 165 747 Antisense
TCTTCCTGTCGGTCTCATAATTGTG 77 617 795 Antisense
ATATCCCGCTCTTGATCCAATGATA 413 21 882 Antisense
CGATATTTTGTCTTTTGCCGTTCAG 354 249 931 Antisense
GTATCATCTGCACTTTCATTAACTT 226 455 967 Antisense
TCATTAACTTCACACCCTTCGAAAG 635 609 982 Antisense
Sequence Source Affymetrix Proprietary Database