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[177757_at]

Description C28A5.5 /REP_DB=WormBase Gene ID /WP=CE00662 /TR=Q18272 /GB=CAA83600.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 59      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 20.1
(-3)
A 		78.9
(3)
A 		72.4
(2.3)
A 		27.6
(-2.2)
A 		59
B 43.9
(3)
A 		9.2
(-3)
A 		17.1
(-1.6)
A 		14
(-2.2)
A 		35
C 36.6
(1.1)
A 		47.4
(3)
A 		40.5
(1.8)
A 		14.1
(-3)
A 		33
avr 33.5
(0.4) 		45.2
(3) 		43.3
(2.6) 		18.6
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 26.6
(-0.3)
A 		41.2
(3)
A 		32.7
(1.1)
A 		29.6
(0.3)
A 		15
(-3)
A 		22.4
(-1.3)
A 		26
B 19
(-0.6)
A 		31.5
(3)
A 		10.5
(-3)
A 		11.1
(-2.8)
A 		15.8
(-1.5)
A 		27.1
(1.7)
A 		21
C 9.2
(-3)
A 		31.5
(3)
A 		18
(-0.6)
A 		19.9
(-0.1)
A 		14.5
(-1.6)
A 		12.5
(-2.1)
A 		22
avr 18.3
(-2) 		34.7
(3) 		20.4
(-1.4) 		20.2
(-1.4) 		15.1
(-3) 		20.7
(-1.3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 7.3
(-1.7)
A 		17.1
(2.3)
A 		18.9
(3)
A 		4
(-3)
A 		15
B 14
(3)
A 		2.3
(-3)
A 		4
(-2.1)
A 		3
(-2.6)
A 		12
C 12.1
(2)
A 		13.6
(2.7)
A 		14.1
(3)
A 		2.4
(-3)
A 		12
avr 11.1
(2.2) 		11
(2.2) 		12.3
(3) 		3.1
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.9
(-2.8)
A 		14.6
(3)
A 		7.1
(-1.5)
A 		7.5
(-1.2)
A 		4.5
(-3)
A 		5.5
(-2.4)
A 		10
B 6.6
(0)
A 		10.5
(3)
A 		2.6
(-3)
A 		3
(-2.7)
A 		6.4
(-0.1)
A 		10.1
(2.7)
A 		8
C 3.4
(-3)
A 		9.6
(3)
A 		4.6
(-1.8)
A 		4
(-2.4)
A 		4.7
(-1.7)
A 		4.2
(-2.2)
A 		6
avr 5
(-2.8) 		11.6
(3) 		4.8
(-3) 		4.8
(-3) 		5.2
(-2.6) 		6.6
(-1.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177757_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6607
Sequence Type Exemplar sequence
Representative Public ID C28A5.5 NCBI
Target Description C28A5.5 /REP_DB=WormBase Gene ID /WP=CE00662 /TR=Q18272 /GB=CAA83600.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065504(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065504 NCBI Caenorhabditis elegans C28A5.5 (C28A5.5) mRNA, complete cds. 11/11 None
C28A5.5 ENSEMBL cdna:known chromosome:CEL140:III:4450903:4452114:1 gene:C28A5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4450902-4452114(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C28A5.5
Entrez Gene 182972 Entrez gene
SwissProt Q18272 EMBL-EBI
WormBase CE00662 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83600 Hypothetical protein C28A5.5 [Caenorhabditis elegans] ref|NP_497905.1| C28A5.5 [Caenorhabditis elegans] 1.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497905.1 1 5-27
C28A5.5 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:177757_AT
gttggttgtgggcggagtagtcgtctcctattggacacagtattctctgggtggagccat
tggggtcgctagagcggatggggagagacaagacaattattttggaaaagtgccgggggg
agaggctggcaagtgtgtgtgcctcaacagggggaccccgccctatattgtagctaattg
ctgggtaattatcccctcaaatcccttatatgagctctgtaacactattgctcttccaaa
ctgtacatattttatccaggtggtaaagtctgttcttccaatccaaatctttaaggtttt
gccgtcggcaccatctgccatgctcacgccaactggagctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGTTGTGGGCGGAGTAGTCGTC 319 235 24 Antisense
GTAGTCGTCTCCTATTGGACACAGT 612 455 40 Antisense
GTGGAGCCATTGGGGTCGCTAGAGC 297 489 74 Antisense
AGTGTGTGTGCCTCAACAGGGGGAC 497 57 155 Antisense
ACCCCGCCCTATATTGTAGCTAATT 361 89 178 Antisense
AATTGCTGGGTAATTATCCCCTCAA 629 177 199 Antisense
AAATCCCTTATATGAGCTCTGTAAC 28 119 222 Antisense
CTCTGTAACACTATTGCTCTTCCAA 56 233 238 Antisense
TCTGTTCTTCCAATCCAAATCTTTA 46 609 292 Antisense
TAAGGTTTTGCCGTCGGCACCATCT 374 635 315 Antisense
CCATGCTCACGCCAACTGGAGCTGA 350 271 341 Antisense
Sequence Source Affymetrix Proprietary Database