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[177756_at]

Description T24D5.1 /REP_DB=WormBase Gene ID /WP=CE03721 /TR=Q22732 /GB=CAA92016.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 41.5
(-1.2)
A 		77.9
(1.1)
A 		12.4
(-3)
A 		107.3
(3)
P 		95
B 89.5
(3)
A 		81.4
(1.5)
A 		66.8
(-1.1)
A 		56.6
(-3)
A 		33
C 19.8
(-2.5)
A 		9.6
(-3)
A 		39.3
(-1.4)
A 		124
(3)
A 		114
avr 50.3
(-1.9) 		56.3
(-1.2) 		39.5
(-3) 		96
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 60.9
(3)
A 		49.2
(0.5)
A 		55.3
(1.8)
P 		45.5
(-0.2)
A 		51.8
(1.1)
A 		32.3
(-3)
A 		29
B 44.4
(-0.6)
A 		68.1
(1.8)
A 		79.7
(3)
A 		20.9
(-3)
A 		39
(-1.2)
A 		38.1
(-1.2)
A 		59
C 19.8
(-1.7)
A 		79
(3)
P 		3
(-3)
A 		18.4
(-1.8)
A 		44.1
(0.2)
A 		33.3
(-0.6)
A 		76
avr 41.7
(-0.8) 		65.4
(3) 		46
(-0.1) 		28.3
(-3) 		45
(-0.3) 		34.6
(-2) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 15.1
(2.2)
A 		16.9
(3)
A 		3.2
(-3)
A 		15.7
(2.5)
P 		14
B 28.5
(3)
A 		20.1
(-0.1)
A 		15.5
(-1.8)
A 		12.1
(-3)
A 		16
C 6.6
(-1.7)
A 		2.8
(-3)
A 		13.7
(0.6)
A 		20.9
(3)
A 		18
avr 16.7
(3) 		13.3
(-0.5) 		10.8
(-3) 		16.2
(2.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 11.2
(-0.9)
A 		17.5
(3)
A 		12
(-0.4)
P 		11.6
(-0.7)
A 		15.6
(1.8)
A 		7.9
(-3)
A 		10
B 15.4
(0.5)
A 		22.7
(3)
A 		19.4
(1.8)
A 		5.5
(-3)
A 		15.8
(0.6)
A 		14.2
(0)
A 		17
C 7.3
(-1.3)
A 		24.1
(3)
P 		0.8
(-3)
A 		3.7
(-2.3)
A 		14.3
(0.5)
A 		11.1
(-0.3)
A 		23
avr 11.3
(-1.2) 		21.4
(3) 		10.7
(-1.4) 		6.9
(-3) 		15.2
(0.4) 		11.1
(-1.3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177756_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17821
Sequence Type Exemplar sequence
Representative Public ID T24D5.1 NCBI
Target Description T24D5.1 /REP_DB=WormBase Gene ID /WP=CE03721 /TR=Q22732 /GB=CAA92016.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077701(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077701 NCBI Caenorhabditis elegans T24D5.1 (T24D5.1) mRNA, complete cds. 11/11 None
GENEFINDER00000013146 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12575083:12577129:1 11/11 None
SNAP00000013137 ENSEMBL cdna:SNAP chromosome:CEL140:X:12575276:12577129:1 10/11 None
T24D5.1 ENSEMBL cdna:known chromosome:CEL140:X:12573989:12577129:1 gene:T24D5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12573988-12577129(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24D5.1
Entrez Gene 188849 Entrez gene
SwissProt Q22732 EMBL-EBI
WormBase CE03721 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92016 Hypothetical protein T24D5.1 [Caenorhabditis elegans] ref|NP_510102.1| T24D5.1 [Caenorhabditis elegans] 1.0E-163
blast CAA92016 Hypothetical protein T24D5.1 [Caenorhabditis elegans] ref|NP_510102.1| T24D5.1 [Caenorhabditis elegans] 1.0E-131
blast CAA92016 Hypothetical protein T24D5.1 [Caenorhabditis elegans] ref|NP_510102.1| T24D5.1 [Caenorhabditis elegans] 1.0E-118
blast CAA92017 Hypothetical protein T24D5.3 [Caenorhabditis elegans] ref|NP_510103.1| T24D5.3 [Caenorhabditis elegans] 3.0E-26
blast CAA92017 Hypothetical protein T24D5.3 [Caenorhabditis elegans] ref|NP_510103.1| T24D5.3 [Caenorhabditis elegans] 7.0E-25
blast CAA92017 Hypothetical protein T24D5.3 [Caenorhabditis elegans] ref|NP_510103.1| T24D5.3 [Caenorhabditis elegans] 4.0E-24
Sequence
Target Sequence 
>C. ELEGANS:177756_AT
caacgaaccacatgccaatgatcccatggcatcactcaaggtggaagttgctcatctcgg
tattgaatcagatactgaagaaagcgcccagttttctcaagaggatgcacgagacttgga
cagtccagagatcgagtataacatcagtatttgggaaaatgagaaaaacagccaacagtc
aatccagaatcatgctcccgaaattccccgaaaagatcaagatggttacctcctcgaatg
caacctaaatatttttctcgaaaaactggagcgtttctcagatcctcagataaatcaaaa
cgaaggagaagaaatgggacccatcctgcgcgccttttcaactgaagttaaaaggcgcgt
gtatcttgagaaaagcgaagttttggacgatcagcctattgccattgaatttcttgaact
ccgacttggccagcttctcgatggaaacgatgatcatgccgttactctctacactttgat
gagcaataagatcaaaattgaacttgatacagttctcctcagtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACGAACCACATGCCAATGATCCC 277 187 312 Antisense
ATGATCCCATGGCATCACTCAAGGT 260 47 329 Antisense
AAGGTGGAAGTTGCTCATCTCGGTA 334 159 349 Antisense
AAGCGCCCAGTTTTCTCAAGAGGAT 576 149 393 Antisense
CAGTCAATCCAGAATCATGCTCCCG 486 207 487 Antisense
TTACCTCCTCGAATGCAACCTAAAT 69 683 537 Antisense
AACTGGAGCGTTTCTCAGATCCTCA 427 143 575 Antisense
TGGACGATCAGCCTATTGCCATTGA 418 543 695 Antisense
TGAATTTCTTGAACTCCGACTTGGC 203 575 717 Antisense
ACGATGATCATGCCGTTACTCTCTA 695 93 758 Antisense
AACTTGATACAGTTCTCCTCAGTCT 347 139 812 Antisense
Sequence Source Affymetrix Proprietary Database