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[177755_at]

Description T19C4.2 /REP_DB=WormBase Gene ID /WP=CE06466 /TR=Q22569 /GB=CAA99916.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 04      6grp_cgc > 64      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 38.5
(-1.2)
A 		7.9
(-3)
A 		13.1
(-2.7)
A 		107.8
(3)
A 		100
B 22.5
(3)
A 		8.3
(-2.6)
A 		7.4
(-3)
A 		11.9
(-1.2)
A 		15
C 8.1
(-2.7)
A 		8.2
(-2.7)
A 		3.4
(-3)
A 		101.7
(3)
A 		98
avr 23
(-1.6) 		8.1
(-3) 		8
(-3) 		73.8
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 10.1
(-2.5)
A 		7.3
(-2.7)
A 		87.7
(3)
A 		4.2
(-2.9)
A 		72.6
(1.9)
A 		3.1
(-3)
A 		85
B 5.4
(-2.6)
A 		40.7
(3)
A 		5.8
(-2.5)
A 		2.8
(-3)
A 		22.2
(0.1)
A 		3.1
(-3)
A 		38
C 6.6
(-2.6)
A 		53
(3)
A 		19
(-1.1)
A 		10.3
(-2.2)
A 		3.4
(-3)
A 		16.8
(-1.4)
A 		50
avr 7.4
(-2.7) 		33.7
(2.3) 		37.5
(3) 		5.8
(-3) 		32.7
(2.1) 		7.7
(-2.6) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 14
(2.2)
A 		1.7
(-3)
A 		3.4
(-2.3)
A 		15.8
(3)
A 		14
B 7.2
(3)
A 		2.1
(-2.6)
A 		1.7
(-3)
A 		2.5
(-2.1)
A 		6
C 2.7
(-2.4)
A 		2.3
(-2.6)
A 		1.2
(-3)
A 		17.1
(3)
A 		16
avr 8
(0.7) 		2
(-3) 		2.1
(-2.9) 		11.8
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.9
(-2.7)
A 		2.6
(-2.5)
A 		19.1
(2.2)
A 		1.1
(-2.9)
A 		21.9
(3)
A 		0.7
(-3)
A 		21
B 1.9
(-2.5)
A 		13.5
(3)
A 		1.4
(-2.7)
A 		0.8
(-3)
A 		9
(0.9)
A 		1.2
(-2.8)
A 		13
C 2.4
(-2.5)
A 		16.2
(3)
A 		4.8
(-1.5)
A 		2.1
(-2.6)
A 		1.1
(-3)
A 		5.6
(-1.2)
A 		15
avr 2.1
(-2.5) 		10.8
(3) 		8.4
(1.5) 		1.3
(-3) 		10.7
(2.9) 		2.5
(-2.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177755_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13548
Sequence Type Exemplar sequence
Representative Public ID T19C4.2 NCBI
Target Description T19C4.2 /REP_DB=WormBase Gene ID /WP=CE06466 /TR=Q22569 /GB=CAA99916.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073435(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073435 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-39) (srg-39) mRNA, complete cds. 11/11 None
SNAP00000015936 ENSEMBL cdna:SNAP chromosome:CEL140:V:11153927:11154763:-1 11/11 None
GENEFINDER00000015941 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11153927:11154742:-1 11/11 None
T19C4.2 ENSEMBL cdna:known chromosome:CEL140:V:11153927:11155018:-1 gene:T19C4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11153926-11155018(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srg-39
Ensembl T19C4.2
Entrez Gene 188591 Entrez gene
SwissProt Q22569 EMBL-EBI
WormBase CE06466 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99916 Hypothetical protein T19C4.2 [Caenorhabditis elegans] ref|NP_505836.1| Serpentine Receptor, class G (gamma) family member (srg-39) [Caenorhabditis elegans] 1.0E-180
blast CAA99916 Hypothetical protein T19C4.2 [Caenorhabditis elegans] ref|NP_505836.1| Serpentine Receptor, class G (gamma) family member (srg-39) [Caenorhabditis elegans] 1.0E-129
blast CAA99916 Hypothetical protein T19C4.2 [Caenorhabditis elegans] ref|NP_505836.1| Serpentine Receptor, class G (gamma) family member (srg-39) [Caenorhabditis elegans] 1.0E-124
blast CAA99915 Hypothetical protein T19C4.3 [Caenorhabditis elegans] ref|NP_505837.1| Serpentine Receptor, class G (gamma) family member (srg-41) [Caenorhabditis elegans] 4.0E-46
blast CAE75183 Hypothetical protein CBG23124 [Caenorhabditis briggsae] 2.0E-45
blast CAE75183 Hypothetical protein CBG23124 [Caenorhabditis briggsae] 3.0E-27
blast CAA99915 Hypothetical protein T19C4.3 [Caenorhabditis elegans] ref|NP_505837.1| Serpentine Receptor, class G (gamma) family member (srg-41) [Caenorhabditis elegans] 7.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505836.1 7 4-26,35-57,96-118,125-147,167-189,209-231,246-268
T19C4.2 7 4-26,35-57,96-118,125-147,167-189,209-231,246-268
SNAP00000015936 5 10-27,40-62,82-104,124-146,161-183
GENEFINDER00000015941 5 4-26,33-55,75-97,117-139,154-176
Sequence
Target Sequence 
>C. ELEGANS:177755_AT
ttaatctgctcccatttatcaacactagtcagcttttctacagtacatgccaatttggaa
atagatctgatgatacgtttgttcttagatgtgacttacccacaaacttattgttcaccc
cactgatctattttcaaggagtatgtactctatgttctcttatttgtaacatcaaaagtt
gctccattgtctggaaggcttcaattgagatgaaggcaaacatggaagccaattttctaa
ttctcattactgtaacttcggctgtgcaaactcttggagcctttataacatttgttctga
atgaatatccgaattctccgatgtacagcacttttcacacctatgtccttccgatcatca
gtgatttattcactgtcatgcaaccatggcttcttgttgctctctgtgaaccgatcagaa
cccgaattcggaaaatattcggattagggtctgcagtcgttgacgtagcgccacacaatt
cccgtgtgggaccgactcaacagcaaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAATCTGCTCCCATTTATCAACAC 48 685 410 Antisense
GTCAGCTTTTCTACAGTACATGCCA 420 465 437 Antisense
TTCACCCCACTGATCTATTTTCAAG 264 687 523 Antisense
GTATGTACTCTATGTTCTCTTATTT 59 457 550 Antisense
GTAACTTCGGCTGTGCAAACTCTTG 37 463 661 Antisense
AATTCTCCGATGTACAGCACTTTTC 485 177 721 Antisense
CTATGTCCTTCCGATCATCAGTGAT 43 225 750 Antisense
GATTTATTCACTGTCATGCAACCAT 345 429 772 Antisense
TTGTTGCTCTCTGTGAACCGATCAG 335 707 803 Antisense
TAGGGTCTGCAGTCGTTGACGTAGC 96 653 854 Antisense
GTGGGACCGACTCAACAGCAAAATG 427 487 895 Antisense
Sequence Source Affymetrix Proprietary Database